Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00070 ATGGAGGAATCAGGGGAAAATTGGCCTTCTGATTCTTACTTGGAAGCAGGTGATGACGTTAAGGATTTCTGTTTTGATGATGAAGAATTCGCGAGCGAGGAGGATGAAGGAGATTCATTTCCTGAGATGAAAAGTACGGACAGAAAACAACGACAACAGAAACTCAGGGAGAGGTTCCTTGCACTCTCAGCAACCATTCCTGGTTTTCAGAAGATGGACAAGAAATCGATTCTAGACAAAGCCAGCAACTACGTGAAACAGCTTGAGCAACGAGTGAGAGAGCTGGAACAAGAAGTTCAATCGAACAAGGTTTGCGCGAGCAGCAGCAGCTCCAGCGAAGTGAATTCCAATGGATCAAATCAAATTCTTCCAGAAGTGAAAGTGAGAGTGTTGCAGAAGGAAGTGCTGATAATAGTTCACTGTGAGAAACAGAAAGGAATCGTGCTCAAAATACTATCACACCTCGAAAATATCAATCTATCTGTGCTCAACAGCAGCGTCTTGCGCTTTGGAAAATCCACCATCGACATCACCATCATTGCTCAGATGGGAGAGGGATACCAGATGGGAGTGGATGAGCTGGTGGAGACACTGAGATTAACGATCTTGAATCAGTAG 618 0.445 MEESGENWPSDSYLEAGDDVKDFCFDDEEFASEEDEGDSFPEMKSTDRKQRQQKLRERFLALSATIPGFQKMDKKSILDKASNYVKQLEQRVRELEQEVQSNKVCASSSSSSEVNSNGSNQILPEVKVRVLQKEVLIIVHCEKQKGIVLKILSHLENINLSVLNSSVLRFGKSTIDITIIAQMGEGYQMGVDELVETLRLTILNQ 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00070 205 MobiDBLite consensus disorder prediction 37 52 - -
Vian9g00070 205 Pfam Helix-loop-helix DNA-binding domain 49 89 IPR011598 GO:0046983
Vian9g00070 205 Coils Coil 78 105 - -
Vian9g00070 205 Gene3D - 43 104 IPR036638 GO:0046983
Vian9g00070 205 PANTHER BHLH TRANSCRIPTION FACTOR 48 203 - -
Vian9g00070 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Vian9g00070 205 MobiDBLite consensus disorder prediction 25 52 - -
Vian9g00070 205 SMART finulus 44 94 IPR011598 GO:0046983
Vian9g00070 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 103 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00070 Vian-Chr9 549684 553400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00070 49 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.412 1.06e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g00070 HLH 0.00023 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00070 - - vum:124835915 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00049 11 431667 433657 Vian9g00070 9 549684 553400 PCT
Vian9g00070 9 549684 553400 Vian11g00048 11 424705 426914 PCT