Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00069 ATGATGGAGGACTCGTGGCAAAACTGGCTCTCTCATTTGGGAATGAATGACAACTTTGGGTGCACCAGCAATAACGGTGTACTCTTTGAAGAGATGATGTGGTTGAATAGTACTGGGCAGGGATGTGATAGCTCCAATAAGGAGGTAGCATGTATGGAGGTAAAAGAGGAACATTCTAAGTGTTGTTGGCGTAAAAGGGGTGTCGAGAAGCATCAAGAGTTGGAGGCAAAGGGAAGGGAGAAGAAAGGAACAAAAAGGGCAAGAACTTCTTCTGAGATAGAATATCACATCATCTCTGAGAGAAAAAGGAGACAGGATATAGCAGAGAAATTCATAGCACTCTCAGCTACCATACCTGGCTTGAAGAAGATAGACAAGGTATCAATCCTTGGGGAAGCCATAAAGTACATGCGACAACTTCAACAACGCATAGCAGTGTTGGAAAAAGCGAGCAACAATAACAGTGTAAAGCCGTTTATCATAGCCAAATCACACCTTTGTTCAGCATCATGTTCAGCAAATTCTAACATTGAAGTGCTCCCTGAAGTTGAAGCAAGTGGGTTAGAGAATGAAGTGCTGATTAGAATCTACTGTGAGAAACGAAAGGACATCTTGCTAAACCTAATGACCCTTCTACAAAGTGTTCATCTCTCAGTAACCAGTAGCAGTGTATTGCCATTTGGAAACTCTCTTCTCAACATTATCATTGTTGCTCGGACGAGTGAGGAGTACAACTTGACGGTAACAGATTTGGTTAAGACGTTGAAGCAGAATCTTTTCATGTTTTATGAGGTGTAA 798 0.4185 MMEDSWQNWLSHLGMNDNFGCTSNNGVLFEEMMWLNSTGQGCDSSNKEVACMEVKEEHSKCCWRKRGVEKHQELEAKGREKKGTKRARTSSEIEYHIISERKRRQDIAEKFIALSATIPGLKKIDKVSILGEAIKYMRQLQQRIAVLEKASNNNSVKPFIIAKSHLCSASCSANSNIEVLPEVEASGLENEVLIRIYCEKRKDILLNLMTLLQSVHLSVTSSSVLPFGNSLLNIIIVARTSEEYNLTVTDLVKTLKQNLFMFYEV 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00069 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 140 IPR011598 GO:0046983
Vian9g00069 265 SMART finulus 97 146 IPR011598 GO:0046983
Vian9g00069 265 Pfam Helix-loop-helix DNA-binding domain 96 141 IPR011598 GO:0046983
Vian9g00069 265 PANTHER BHLH TRANSCRIPTION FACTOR 43 260 - -
Vian9g00069 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 153 IPR036638 GO:0046983
Vian9g00069 265 Gene3D - 99 173 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00069 Vian-Chr9 540358 542489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00069 68 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.981 2.37e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g00069 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00069 - - gmx:100778916 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00048 11 424705 426914 Vian9g00069 9 540358 542489 PCT