Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00068 ATGGATTGCCAGAACGAGTTCTTCTACGACTATGACCCTATCAACGATGACTGTGATGATTTCTTCACCGACATCATCCTCCAGCCGACACCGCCCACGCCGTTCTCCTCCGAGAGCGAAAGCGATCACTCTTTTCGCGCTTCCAACACCGTCCAAACCACTTCCTTCCTCCCCAGCGCCGCCGTTAACGCCGTCGCTTCCAAACGCTCCGCTCCCCGGACTTACATTCTCTCCTTCGATAGCTCAACGGTGGTACCCGCCACACCCGAACCCTCCGTCCCTTCTTCCCTTTTACCCGCTAAACGGGCCCTCCACACTCAAAGCCCAACAACCAGGCCCAATCAAGCATCTAAGAGAACCCGAACCTCTTCTCAGACCGTCGATCACATAATGGCCGAGAGAAAGAGGAGGCAAGAACTCACCGAGAGATTCATAGCACTCTCAGCCACCATTCCCGGCTTGAACAAGACGGACAAGGCTTCGGTGCTTCGAGCAGCGATCGATTATGTGAAACAACTCAAAGAAAAGGTAGATGAACTGGAGAAGCAAAACAGAAAGAGTGCAGCGGAGACAGTAATATTGGTGAATAAAACCGACTCAAATGGAAATGAAGATAGCACCAACTCCACTGAAACGAACTGCAGCATGCTTCCTGAGATGGAAGCGAGAGTGTTGGGGAAGGAGGTGCTCATTGAGATCCACTGTGAGAAAGAATATGGTGTTGAGCTAAAAATATTAGACCATCTTGAAAATCTTCATCTCTGCGTAACCGGTAGCAGTGTTTTGCCATTTGGGAATTCCGCTCTCTGCATTACCATCACAGCTCAGATGGATGAGGAGTATGAGATGACAGTGAATGATCTAGTGAAAAACCTGAGAGAAGTTCTATCAAAGTCTCATTTGGTAAGTTACAGTGATCCGTACTAG 927 0.4919 MDCQNEFFYDYDPINDDCDDFFTDIILQPTPPTPFSSESESDHSFRASNTVQTTSFLPSAAVNAVASKRSAPRTYILSFDSSTVVPATPEPSVPSSLLPAKRALHTQSPTTRPNQASKRTRTSSQTVDHIMAERKRRQELTERFIALSATIPGLNKTDKASVLRAAIDYVKQLKEKVDELEKQNRKSAAETVILVNKTDSNGNEDSTNSTETNCSMLPEMEARVLGKEVLIEIHCEKEYGVELKILDHLENLHLCVTGSSVLPFGNSALCITITAQMDEEYEMTVNDLVKNLREVLSKSHLVSYSDPY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00068 308 Pfam Helix-loop-helix DNA-binding domain 128 174 IPR011598 GO:0046983
Vian9g00068 308 Coils Coil 163 190 - -
Vian9g00068 308 MobiDBLite consensus disorder prediction 101 127 - -
Vian9g00068 308 MobiDBLite consensus disorder prediction 85 127 - -
Vian9g00068 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 194 IPR036638 GO:0046983
Vian9g00068 308 MobiDBLite consensus disorder prediction 29 49 - -
Vian9g00068 308 PANTHER BHLH TRANSCRIPTION FACTOR 43 298 - -
Vian9g00068 308 SMART finulus 130 179 IPR011598 GO:0046983
Vian9g00068 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Vian9g00068 308 Gene3D - 121 193 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00068 Vian-Chr9 534943 536548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00068 81 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.991 1.10e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g00068 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00068 - - vun:114166804 517.309