Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00059 ATGGACGCTCTCGAAAGACTGAAGAATGAGAATATCGATCTCGGCAAACCCCCAGATTGGCAGGATTTTATAGGAATACTGGCACTGCTTGTAATAAACTCTACCATTAGTTTTATTGAAGAAAATAATGCAGGCAATGCGGCTGCAGCACTTATGGCAGGTCTTGCTCCCAAAACTAAGGTTCTAAGAGATGGGAAGTGGACTGAGGAAGAGGCTGCTATATTGGTACCCGGCGACATCATCAGCATCAAGTTAGGAGACATAGTGCCTGCTGATGCGCGTCTCTTAGACGGAGATCCTCTCAAGATTGATCAATCTGCGTTGACTGGTGAATCATTGCCTGTTTCAAAAAATCCAGGTGATGAAGTCTTCTCTGGTTCTACTGTTAAGCAAGGAGAGCTTGAGGCTGTTGTAATTGCTACTGGAGTACATACCTTTTTTGGTAAAGCTGCTCACTTGGTAGACAGCACGAACCAAGAAGGTCACTTTCAAAAGGTGTTGACAGCCATTGGTAACTTTTGCATTTGTTCCATAGCTGTTGGTATGGTTGTAGAAGTTATTATTATGTATCCAATTCAGCACCGACCCTACAGGAATGGAATTGACAATCTATTGGTCCTTCTCATTGGAGGCATTCCGATTGCCATGCCAACTGTGTTGTCAGTAACTATGGCTATTGGTTCCCATAGACTCTCCCAGCAAGGTGCCATTACGAAGAGAATGACAGCCATTGAGGAAATGGCTGGAATGGATGTTTTATGCAGTGACAAGACTGGCACTTTAACTCTGAACAAACTCACTGTAGACAAGAGTTTAATTGAGGTTTTCGGAAAAAATGCTGATAAGGATACTGTAATTTTACTTGGAGCTCGAGCTTCTAGGGTGGAGAATCAAGACGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGACCCAAGAGAGGCAAGAGATGGTATCAAAGAGATTATAGAGCTCTGTCGTCTTCGGGAAGATGTGAAGAAAAAAGTTCATGCCATTATCGGAAAATTTGCTGACAGAGGTCTCCGTTCCCTTGCTGTTGCCCAACAAGAAGTTCCAGAGAAAACCAAGGAGAGTAGTGGAGGACCGTGGCAATTTGTGGGTCTCTTGCCTTTGTTTGACCCACCTAGACACGATAGTGCAGAGACAATTAAACGTGCTCTTCATCTTGGGGTGAACGTCAAGATGATTACCGGCGATCAATTAGCTATCGGGAAGGAGACTGCTCGGAGACTTGGAATGGGAAGTAACATGTACCCGTCTTCCTCCCTTCTTGGCGATCACAAGGATGAATCTGTTGCTGCAATTCCCGTCGAAGAGCTTATTGAACAGGCCGATGGATTTGCTGGTGTTTTTCCTGAGCACAAATACGAGATTGTGAAAATACTTCAAGAGAGAAAACACATATGTGGAATGACAGGAGATGGTGTTAATGATGCTCCTGCCCTCAAAAAGGCAGATATTGGAATTGCAGTAGCTGATGCAACGGATGCAGCTAGAGGTGCATCCGACATAGTACTAACAGAGCCTGGCCTCAGTGTGATTGTGAGTGCAGTTTTGACCAGTAGATCCATTTTTCAGAGAATGAAGAACTACACCATTTACGCAGTTTCCATCACAATAAGGATTGTGTTCGGCTTTTTACTGATTGCACTTATATGGAAATTTGATTTCTCACCTTTCATGGTTTTAATTATTGCAATACTAAATGACGGAACAATCATGACCATCTCGAAGGACAGAGTAAAGCCATCCCCTCTGCCTGATTCATGGAAGTTGGAAGAGATTTTTGTCACAGGCGTAGTTCTTGGTACTTACCTCGCTCTCATGACGGTTGTCTTCTTCTGGGCTGCTCACGGTTCTGATTTCTTCACCGAAAAATTTGGTGTTAGATCTATCAGATTAAACCCAGATGAGCTTACCGCGGCTGTTTATCTTCAAGTAAGCATTGTAAGTCAGGCTCTTATATTTGTAACTCGATCAAGGAGTTGGTCTTACTTTGAGCGCCCTGGCTTTTTGCTTATAACCGCATTTATAGTTGCACAACTGATTGCGACAGTTATAGCCGTTTATGCAAATTGGGGTTTTGCAAGGATGAAAGGGATTGGATGGGGCTGGGCTGGTGTCATTTGGATCTATAGTATCATCTTCTACATCCCATTGGATATTTTGAAATTCGCAATTCGATATTACTTGAGTGGCAGGGCATGGAATAATATCACCGAAAATAGGACTGCATTCACTTCAAAGAAGGATTATGGAAAGGAAGAACGAGAAGCACAATGGGCTATTGCTCAACGCACATTACATGGGTTGGATCCTCCTCAAAACGAACACACTTTTTCAGAAAGAACTAACTACCGTGAATTATCTGAAATTGCAGAACAGGCAAGAAAACGAGCTGAAGTTGCAAGATTGCGGGAACTTCACACATTGAAGGGACACGTGGAGTCGGTTGTGAAATTGAAAGGACTCGACATTGATACAATTCAACAGCACTATACTGTTTGA 2529 0.4314 MDALERLKNENIDLGKPPDWQDFIGILALLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEEEAAILVPGDIISIKLGDIVPADARLLDGDPLKIDQSALTGESLPVSKNPGDEVFSGSTVKQGELEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTAIGNFCICSIAVGMVVEVIIMYPIQHRPYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFGKNADKDTVILLGARASRVENQDAIDACIVGMLGDPREARDGIKEIIELCRLREDVKKKVHAIIGKFADRGLRSLAVAQQEVPEKTKESSGGPWQFVGLLPLFDPPRHDSAETIKRALHLGVNVKMITGDQLAIGKETARRLGMGSNMYPSSSLLGDHKDESVAAIPVEELIEQADGFAGVFPEHKYEIVKILQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRSIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLEEIFVTGVVLGTYLALMTVVFFWAAHGSDFFTEKFGVRSIRLNPDELTAAVYLQVSIVSQALIFVTRSRSWSYFERPGFLLITAFIVAQLIATVIAVYANWGFARMKGIGWGWAGVIWIYSIIFYIPLDILKFAIRYYLSGRAWNNITENRTAFTSKKDYGKEEREAQWAIAQRTLHGLDPPQNEHTFSERTNYRELSEIAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00059 842 CDD P-type_ATPase_H 17 732 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vian9g00059 842 Gene3D - 791 842 - -
Vian9g00059 842 FunFam Membrane H(+)-ATPase1 319 379 - -
Vian9g00059 842 Gene3D - 19 250 - -
Vian9g00059 842 PRINTS H+-transporting ATPase (proton pump) signature 336 354 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian9g00059 842 PRINTS H+-transporting ATPase (proton pump) signature 479 495 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian9g00059 842 PRINTS H+-transporting ATPase (proton pump) signature 451 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian9g00059 842 PRINTS H+-transporting ATPase (proton pump) signature 651 672 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian9g00059 842 PRINTS H+-transporting ATPase (proton pump) signature 510 535 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian9g00059 842 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 739 IPR023298 -
Vian9g00059 842 Coils Coil 793 813 - -
Vian9g00059 842 PANTHER CALCIUM-TRANSPORTING ATPASE 320 774 - -
Vian9g00059 842 FunFam ATPase 4 plasma membrane-type 465 706 - -
Vian9g00059 842 FunFam Plasma membrane ATPase 57 141 - -
Vian9g00059 842 NCBIfam HAD-IC family P-type ATPase 26 427 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian9g00059 842 NCBIfam HAD-IC family P-type ATPase 452 567 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian9g00059 842 Gene3D - 380 516 IPR023214 -
Vian9g00059 842 Gene3D - 251 265 IPR023214 -
Vian9g00059 842 PRINTS P-type cation-transporting ATPase superfamily signature 502 514 - -
Vian9g00059 842 PRINTS P-type cation-transporting ATPase superfamily signature 396 406 - -
Vian9g00059 842 PRINTS P-type cation-transporting ATPase superfamily signature 104 118 - -
Vian9g00059 842 PRINTS P-type cation-transporting ATPase superfamily signature 479 498 - -
Vian9g00059 842 PRINTS P-type cation-transporting ATPase superfamily signature 254 268 - -
Vian9g00059 842 PRINTS P-type cation-transporting ATPase superfamily signature 374 385 - -
Vian9g00059 842 SUPERFAMILY Calcium ATPase, transduction domain A 57 154 IPR008250 -
Vian9g00059 842 FunFam Plasma membrane ATPase 372 527 - -
Vian9g00059 842 Pfam E1-E2 ATPase 56 233 - -
Vian9g00059 842 ProSitePatterns E1-E2 ATPases phosphorylation site. 256 262 IPR018303 -
Vian9g00059 842 Gene3D - 517 706 - -
Vian9g00059 842 SUPERFAMILY HAD-like 250 526 IPR036412 -
Vian9g00059 842 Gene3D - 57 141 - -
Vian9g00059 842 Pfam haloacid dehalogenase-like hydrolase 250 493 - -
Vian9g00059 842 Gene3D - 321 379 IPR023299 GO:0000166
Vian9g00059 842 Gene3D - 266 320 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00059 Vian-Chr9 473470 478953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00059 15 842 Primary Pumps ATPases AT3G42640 80.046 0.0 1387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00059 K01535 - gmx:100818997 1478.38