Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00054 ATGGATCTTCAAAGGCAAGAGCCATGCCCTTCTGAGAGCTTGAACATGATCACATTTTCAGATACTATGCCATGCCAAAGATCTTCCATAGACACTCAAAGAAAGAGGAATCACACAGAAAGTGATGATCAAAAGCACCCAAATGACTCAAATCCTCGTGTCTTACTAGATCTAAGTCTCTCCAACAAGGATTCAGGTGATGATGATGAGTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCATACGAATTTCTCTGAAAATTCATCAGAATCTAGTCAGGGAAATGAACTGGATCCCCGGGTTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTGGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACGTATTCCACCATGCCTTTTCTTCCTTCTCACGGCTTATACAACAAATCACTTGGAATTCAGGTTCATGCCATGATTAACAAACCTTCTCATCAAGCACCCATTTTTGGGTTGTGCCGTTCCAATGGGTGGCAGAGGCAGCCTTTGGATTCTCAACCAGCAATTGGAAATTTTCGTGTGGGGGCAGAATCTGAGTCATCCTTGGCTGATAGTGTTCCAAAAGTAGGCAAGTTTTCCACAAGGGTAGTGACAGAGGGATTTGGAGGTCACTGTTTTGGTAGCTTTGCTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 780 0.4321 MDLQRQEPCPSESLNMITFSDTMPCQRSSIDTQRKRNHTESDDQKHPNDSNPRVLLDLSLSNKDSGDDDESKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSTMPFLPSHGLYNKSLGIQVHAMINKPSHQAPIFGLCRSNGWQRQPLDSQPAIGNFRVGAESESSLADSVPKVGKFSTRVVTEGFGGHCFGSFAHLKSKQEKLQKLDLSLKL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00054 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Vian9g00054 259 MobiDBLite consensus disorder prediction 8 30 - -
Vian9g00054 259 MobiDBLite consensus disorder prediction 31 50 - -
Vian9g00054 259 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vian9g00054 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 259 IPR044246 GO:0009788
Vian9g00054 259 Gene3D Classic Zinc Finger 81 142 - -
Vian9g00054 259 MobiDBLite consensus disorder prediction 1 73 - -
Vian9g00054 259 FunFam Zinc finger protein 2 81 149 - -
Vian9g00054 259 SUPERFAMILY beta-beta-alpha zinc fingers 100 130 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00054 Vian-Chr9 443593 444372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00054 9 259 C2H2 Transcription Factor Family AT5G10970 38.951 2.13e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian9g00054 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00054 - - gmx:100816861 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00054 9 443593 444372 Vian9g00054 9 443593 444372 ECH