Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00052 ATGATTGCTGAGACAAGTGCATCTGCCACAGTACTTAACTTCTTAATGGACAGCGAGGAAGTCCCATCAGCACCTTCTACACCTGCAACACCAGGGGCTCCTCTTTTTGTAGCAACCTCAGATGGAGCCAAGCCTAGAGTTTCTTGCTCTTTACCATCCTCTCCCATCCCCCTAGCAAAAAAGGTTGGAGCTGAGTTTATTGGCACGTTCATCCTCATGTTTGCTGCTATTGGCACTGCTATTGTGAACCAGAAGACTCATGGCTCGGAGACTCTGATTGGATGTGCTGCAGCAAATGGACTTGCTGTCATGATCATCATTTTCTCCACTGGTCACATCTCTGGGGCTCATCTCAACCCCGCTGTCACCATTTCCTTCGCTGCATTAAAGCACTTTCCGTGGAAGAATGTGCCAGTGTATATTGTTACACAAGTTTTGGCATCAGTAAGTGCTGCATTTGCTCTGAAAGTGGTTTTTCATCCCTTCATGAGCGGTGGAGTGACGGTCCCTTCAGTAGGATATGGGCAAGCTTTCGCCACAGAGTTCATTGTCAGCTTTATTCTCATGTTCGTTGTCACTGCAGTGGCCACCGACACAAGAGCTAAGGCAAGTAGAGATAAGAAAGAATGGAATAGTGTGCGTGAGTGTGGAAAAAGAGGAAGTGGTGATGGGCCAGCAACTGGAAGTTCAATGAACCCTGTTAGAACATTGGGTCCAGCCATTGCTGCAAACAACTACAAGGGCATATGGGTGTATCTCATTGCTCCCATATTTGGAACTCTCTGTGGGGCAGGTGCCTACACTGTGGTCAAGCTGCCCGAGGAAGAGGCAACAAAACCACCACCTCATTCGCCTTCTGCCATTGTTGGGAGCTTCAGAAGCTCATCATGA 891 0.4815 MIAETSASATVLNFLMDSEEVPSAPSTPATPGAPLFVATSDGAKPRVSCSLPSSPIPLAKKVGAEFIGTFILMFAAIGTAIVNQKTHGSETLIGCAAANGLAVMIIIFSTGHISGAHLNPAVTISFAALKHFPWKNVPVYIVTQVLASVSAAFALKVVFHPFMSGGVTVPSVGYGQAFATEFIVSFILMFVVTAVATDTRAKASRDKKEWNSVRECGKRGSGDGPATGSSMNPVRTLGPAIAANNYKGIWVYLIAPIFGTLCGAGAYTVVKLPEEEATKPPPHSPSAIVGSFRSSS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00052 296 MobiDBLite consensus disorder prediction 212 231 - -
Vian9g00052 296 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian9g00052 296 PRINTS Major intrinsic protein family signature 60 79 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian9g00052 296 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian9g00052 296 PRINTS Major intrinsic protein family signature 136 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian9g00052 296 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian9g00052 296 PRINTS Major intrinsic protein family signature 99 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian9g00052 296 SUPERFAMILY Aquaporin-like 57 278 IPR023271 -
Vian9g00052 296 PANTHER AQUAPORIN NIP2-1 49 279 IPR034294 -
Vian9g00052 296 MobiDBLite consensus disorder prediction 275 296 - -
Vian9g00052 296 Pfam Major intrinsic protein 58 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian9g00052 296 Gene3D Glycerol uptake facilitator protein. 53 279 IPR023271 -
Vian9g00052 296 ProSitePatterns MIP family signature. 117 125 IPR022357 -
Vian9g00052 296 Coils Coil 296 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00052 Vian-Chr9 425269 429100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00052 16 276 Major Intrinsic Protein MIP AT1G80760 61.311 2.37e-115 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00052 K09874 - gmx:100798410 412.149