LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian9g00037	ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTGTCGTATCAATCAAGCTCAAGTGGGATGAAAAAATTAAGATTCAATTTAGATTCTCTGCCAATTCCTGGTCGTGGAAGAAAAAGAGCATCGAAATCGTTTAAGCTAGGAGTGAAGAAGGGTTCGGATGGACTAAAAACATTTGGAAGATCACTCAAGAGTGGGGTGACTACATGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTGTTTGATCCTCAAGACAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAATGAGCTAGCAAGTTTTGCTGTCACATTGAGAACAATATGCGATGCCGTTTATCTTATCCGCATAAGTTTTCAATCAGGACGTGTAAAGGTCTTGGAAACAAAAACGTTACTGCTGAGAATTGTGATTCTGCAATATTTTCCAAGATTTATACGTTTTTTACCTTTAGCTTCTGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCACTGCTCGGGGCCATGTACTATTTGATATGGTATATGCTTGCTAGTCACATAACTGGCTCTTGCTGGTACTTACTAGCCATTGAACGTAATGACAGCTGCTGGAAGAATGCTTGTAGAGCAGTTGAAGGGTGCAATACACATTTCTTGTACTGTGCGAATTCGAACAAGCGTATGCCAGGGTATGACACTTGGAGAAATGTTAGCGAAACTGTTCTGAAAAGTCAGTGCTATGTGGAGGATGGTTCCTCAGAATTTAGCTATGGCATCTTCTCTCAAGCTATAGAGTCTGATATTGTTGCTTCCATAGAAGTTTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGTCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACATACCCAACAGAGGTTATGTTTTCCATAGTAATAGCTATCATGGGGCTTATCCTTTTTGCTCTTCTGATCGGAAACATGCAGACCTACCTTCAATCGATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGATTCTGAGCAATGGATGCATCATCGTTTGCTTCCTCCAGAACTAAGGGAAAGAGTGAGACGCTATGACCAATACAAGTGGCTGAACACCCGTGGAGTAGATGAAGAGAGCATAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAACGTTTGCTTGATGCTATATGTGAGCGATTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTCACCACAGATGGTGGAAGAAGTGGGTTCTTCAACAGAGGTCTTCTGAAGGAAAATGACTTCTGTGGAGAGGAGCTACTAACGTGGGCATTGGACCCCAAATCAGGTGCTAACTTGCCATCATCAACAAGAACTGTAAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAGTTTGTTGCTTCCCAGTTTAGGCACATCCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCTGCATGGAGGCGGCATTGCAGGAGAAAGATAGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATATGACTCTGATTATGACAACAGTGATGATTCTGCAAAAGCGTTGGTCAAGCATTCTGAAAAGGCTGCTTTTCCTTCTTCTAACCTTGGACTTGCTACAACCGTCTATGCATCTCGCTTTGCTGCAAATGCACTTCGTGGTCATAGGCGTCGTGATTCAAGTTCCAAGGACATACTCAAACTCCAAAAGCCCCCAGAACCTGACTTCAGTGATTATGATGAAAACTGA	2091	0.4242	MFDSGYKSQYIGGQKEKFVRLDDLDSNLSYQSSSSGMKKLRFNLDSLPIPGRGRKRASKSFKLGVKKGSDGLKTFGRSLKSGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTLRTICDAVYLIRISFQSGRVKVLETKTLLLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLAIERNDSCWKNACRAVEGCNTHFLYCANSNKRMPGYDTWRNVSETVLKSQCYVEDGSSEFSYGIFSQAIESDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPTEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKENDFCGEELLTWALDPKSGANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDYDNSDDSAKALVKHSEKAAFPSSNLGLATTVYASRFAANALRGHRRRDSSSKDILKLQKPPEPDFSDYDEN	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian9g00037	696	Pfam	Ion transport protein	110	382	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Vian9g00037	696	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	92	171	-	-
	Vian9g00037	696	Pfam	Cyclic nucleotide-binding domain	476	565	IPR000595	-
	Vian9g00037	696	SMART	cnmp_10	455	586	IPR000595	-
	Vian9g00037	696	MobiDBLite	consensus disorder prediction	666	690	-	-
	Vian9g00037	696	FunFam	Cyclic nucleotide-gated ion channel 1	382	446	-	-
	Vian9g00037	696	CDD	CAP_ED	455	586	IPR000595	-
	Vian9g00037	696	ProSiteProfiles	cAMP/cGMP binding motif profile.	455	585	IPR000595	-
	Vian9g00037	696	ProSiteProfiles	IQ motif profile.	591	620	IPR000048	GO:0005515
	Vian9g00037	696	FunFam	Cyclic nucleotide-gated ion channel 1	453	571	-	-
	Vian9g00037	696	Gene3D	Jelly Rolls	453	573	IPR014710	-
	Vian9g00037	696	MobiDBLite	consensus disorder prediction	666	696	-	-
	Vian9g00037	696	SUPERFAMILY	cAMP-binding domain-like	385	575	IPR018490	-
	Vian9g00037	696	SUPERFAMILY	Voltage-gated potassium channels	103	377	-	-
	Vian9g00037	696	Gene3D	Helix hairpin bin	382	446	-	-
	Vian9g00037	696	Gene3D	-	93	380	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian9g00037	Vian-Chr9	324963	328265	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian9g00037	6	690	Ion Channels	AT1G15990	62.500	0.0	885

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian9g00037	K05391		-	gmx:100810453	1105.89