Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00026 ATGCAACTCCCACCGCCTTCTGCCTCTGGCTCCGCCTCCGCTCCGCCGCCTACCAACAACAAGGATCACCGTCCCCAGCGACGCCGCAAGGACCTCACGCTGCCGCTGCCGCAGCGTGACACTAATTTGGCGGTGCCGCTTCCTCTTCCGCCATCCACGGCTCCGCCCGCGGCCAGCGGAGGAGCCAGCCAGCAGCAGCAGCAGCAACAGCTGGTGATCCCGTTCGCAGAGCTGGAGAGACTGAACCGCATCGGGAGCGGGAGCGGGGGGACTGTGTACAAGGTTGTGCACCGAACTAGCGGGCGCGTGTACGCGCTGAAGGTGATATACGGGCACCACGAGGAGTCCGTGAGGCGGCAGATCCACCGGGAAATCCAGATCCTGCGGGACGTGGACGATCCGAACGTGGTGAAGTGTCACGAGATGTACGATCAGAACAGCGAAATCCAGGTGCTTCTGGAGTTCATGGACGGGGGATCTCTGGAAGGGAAGCACATCCCGCACGAGCAGCAGCTGGCAGATCTGTCCAGGCAGATTCTTCGGGGGCTGGCGTACCTGCACCGGCGGCACATCGTGCACAGGGACATCAAACCCTCGAATCTGCTGATAAACTCGCGGAAGCAGGTGAAGATCGCGGACTTCGGGGTGGGTCGGATTCTGAACCAGACCATGGATCCGTGCAATTCTTCGGTGGGGACGATCGCCTACATGAGTCCGGAGAGGATCAACACGGACATAAACGACGGCCAATACGACGCTTACGCGGGGGACATATGGAGCTTTGGGGTTAGCATATTGGAGTTCTACATGGGCAGATTTCCCTTCGCGGTTGGGAGGCAGGGCGATTGGGCCAGCCTCATGTGCGCTATCTGTATGTCTCAGCCACCCGAGGCTCCTCCCTCTGCCTCCCTCCACTTCAGGGATTTCATCTCTAGGTGCCTCCAGCGGGATCCCTCTCGCCGATGGTCTGCCTCAAGGTTGCTGGAACACCCTTTCATTGCCCCTCCCCACTCCAACCACAATCAGCTTCCTCCCAATCTCCACCAGCTCCTACCCCCTCCTCCTCCCAGGCCTCTTCCCTCCTAG 1086 0.6087 MQLPPPSASGSASAPPPTNNKDHRPQRRRKDLTLPLPQRDTNLAVPLPLPPSTAPPAASGGASQQQQQQQLVIPFAELERLNRIGSGSGGTVYKVVHRTSGRVYALKVIYGHHEESVRRQIHREIQILRDVDDPNVVKCHEMYDQNSEIQVLLEFMDGGSLEGKHIPHEQQLADLSRQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSFGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPPSASLHFRDFISRCLQRDPSRRWSASRLLEHPFIAPPHSNHNQLPPNLHQLLPPPPPRPLPS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00026 361 CDD PKc_MAPKK_plant_like 76 333 - -
Vian9g00026 361 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vian9g00026 361 ProSiteProfiles Protein kinase domain profile. 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00026 361 MobiDBLite consensus disorder prediction 21 35 - -
Vian9g00026 361 SMART serkin_6 78 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00026 361 FunFam Mitogen-activated protein kinase 2 158 344 - -
Vian9g00026 361 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 26 335 - -
Vian9g00026 361 MobiDBLite consensus disorder prediction 1 69 - -
Vian9g00026 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Vian9g00026 361 SUPERFAMILY Protein kinase-like (PK-like) 78 354 IPR011009 -
Vian9g00026 361 FunFam Mitogen-activated protein kinase 2 59 157 - -
Vian9g00026 361 Pfam Protein kinase domain 79 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00026 361 Gene3D Transferase(Phosphotransferase) domain 1 160 345 - -
Vian9g00026 361 Gene3D Phosphorylase Kinase; domain 1 57 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00026 Vian-Chr9 276469 277554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00026 27 349 MAP Kinase Kinase Gene Family AT1G51660 71.988 4.07e-168 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vian9g00026 Pkinase 1.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00026 K13413 - gmx:100786390 575.474