Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00025 ATGAAGGAGAAGGGCAAAGAGAAGGAGACAGAGAAGAAGAAGTATCCGATCGGAGCTGAACATTACCTTCTCTACGAAGAGATTGGTCAGGGCGTCAGCGCTTCTGTTCACCGTGCGCTCTGCGTTCCCTTCAACGAGGTCGTCGCGATCAAAATCCTCGACTTCGAACGTGACAATTGCGATCTGAACAACGTGTCTCGTGAGGCGCAGACAATGATCCTGGTGGACCACCCTAACGTGCTCAAATCACACTGCTCCTTCGTGAGCGAGCACAATCTGTGGGTGGTCATGCCGTATATGTCGGGCGGCTCGTGCCTCCACATACTCAAAGCCGCTCACCCCGACGGGTTTGAGGAGGTTGTGATTGCGACCGTTCTCAAAGAGGTGCTGAAGGGTTTGGAGTACCTTCACCATCACGGCCACATCCACCGCGACGTCAAGGCTGGCAACATTCTCATCGATTCACGCGGCGCCGTCAAGCTTGGCGACTTTGGTGTTTCCGCTTGCCTTTTTGATTCTGGTGACCGCCAACGCACCAGGAATACATTTGTTGGAACTCCTTGCTGGATGGCACCCGAGGTCATGGAGCAACTCCACGGCTACAACTTCAAAGCTGACATCTGGTCATTTGGTATTACCGCCTTGGAGCTTGCTCATGGTCATGCTCCTTTCTCAAAGTATCCACCAATGAAGGTACTGCTCATGACTTTGCAAAACGCACCCCCTAGCCTTGACTACGAAAGGGATAAGAAGTTCTCTAAGTCGTTTAAGCAGATGATTGCTAGCTGCTTGGTAAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTAAAGCATTCCTTCTTTAAGCAGGCTCGCTCCAATGATCATATTCGAAGGCTCTTGGAGGGGCTGCCTGCGTTAGGTGATCGAATGGAGGCCCTAAAGAGAAAAGAAGAGGATATGCTCGCACAAAAGAAAATGCCTGATGGTAAGATGGAGGAATTATCACAGAATGAATACAAACGAGGAATTAGTGGCTGGAACTTCAATCTCGAAGATATGAAGGCTCAGGCTTCCTTGATCCATGATTTCGACGATGCTATTACCGATATGAATCATGCAGCAAGTTCAAGTTCTTTAGCTACACTTGATTCACAAGAGAAACCATTACCGAGTGCATTTCACAACCCTTCTCGATCTGTTGATATGCAATTTCTTAAATGGAGTAGTTCTAATGCCTTTGGTTCACAGGAAGAAAATGATGAGATGCGAAATCAATCAGCTTCTGTTTCTGCAATTGATGCCAAAACTAGGCTTGAAAAATCCAACGATGACTCTTGCATCACCAGTTCGAGCCATGAACCACAAATTAATTCATCCTGTATCGATAATCACGTGGACAATAATTTGGGTGAGAAATCTGACAACGAAAACGGTGGAAGATTGGTGGACGGGACGTCCACCCATCTTCATCATAGAAGAGGATGTTCATCGAGCATCTTACCCGAAGTTGTCTTTCCACCAATTCGACCAGAAAGTGATAAACCGCAAAATCTGCTCCAGAACGGTTCAAGTTGCAATGCAACTTCAGTTCCACAGACAGGAGAGGACGTACTTACTGAACTTCCATCAAAAGTCTCAAAATCACCAGCTAATTCTGATGACCCTGATGAGAAATCGAAAGTGCCAGTTGTACAGCAGAGAGGACGTTTTAAGGTTACATCTGAAAATGTTGACCCAGAAAAGGTGGGCCCTTCTCCTGTACTGCAAAAGAGTCATAGCATGCAGGTTTTTAGCCAGCATAATGTTGCTTCTGTACAACAACCAACTTTGCCATTATTACCAGCATATGAAGCCACATCATCAAATCTTTCGGGTCACGCCGTGTTTCCCATATTGCACTCTGTACTGCAGACAAATATTCTTCAACAGGAAAGCATTTTATGTTTAATGAGGCTTATTACTGCCGGTGACTCTACAGCTGATGGCTCATGTACCCTAGCTCAAATAGCAGGAACTGAAAAATCTTTGCTTGAAGCTGCTCAGGAAAGGGAGAAGGAGTTACTTAGTGAGATAACTGATTTGCAATGGAGGCTTATCTGTGCTCAGGAGGAGCTTCAAAAATTGAAAACAGAAAACGCCCAGGCAAATGTGAAGGTGAAGGATTTTCCATCAGTATTTGTGTTTCGAATGCGAGACGTCATCAACAGATCGCCGGCAGGTCCCAAAGCTATCCTCAACCGGAACTCATATCTATAA 2244 0.4599 MKEKGKEKETEKKKYPIGAEHYLLYEEIGQGVSASVHRALCVPFNEVVAIKILDFERDNCDLNNVSREAQTMILVDHPNVLKSHCSFVSEHNLWVVMPYMSGGSCLHILKAAHPDGFEEVVIATVLKEVLKGLEYLHHHGHIHRDVKAGNILIDSRGAVKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPSLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDHIRRLLEGLPALGDRMEALKRKEEDMLAQKKMPDGKMEELSQNEYKRGISGWNFNLEDMKAQASLIHDFDDAITDMNHAASSSSLATLDSQEKPLPSAFHNPSRSVDMQFLKWSSSNAFGSQEENDEMRNQSASVSAIDAKTRLEKSNDDSCITSSSHEPQINSSCIDNHVDNNLGEKSDNENGGRLVDGTSTHLHHRRGCSSSILPEVVFPPIRPESDKPQNLLQNGSSCNATSVPQTGEDVLTELPSKVSKSPANSDDPDEKSKVPVVQQRGRFKVTSENVDPEKVGPSPVLQKSHSMQVFSQHNVASVQQPTLPLLPAYEATSSNLSGHAVFPILHSVLQTNILQQESILCLMRLITAGDSTADGSCTLAQIAGTEKSLLEAAQEREKELLSEITDLQWRLICAQEELQKLKTENAQANVKVKDFPSVFVFRMRDVINRSPAGPKAILNRNSYL 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00025 747 SMART serkin_6 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00025 747 Pfam Protein kinase domain 25 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00025 747 Gene3D Phosphorylase Kinase; domain 1 10 98 - -
Vian9g00025 747 FunFam Serine/threonine-protein kinase BLUS1 11 99 - -
Vian9g00025 747 MobiDBLite consensus disorder prediction 439 462 - -
Vian9g00025 747 ProSiteProfiles Protein kinase domain profile. 22 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00025 747 MobiDBLite consensus disorder prediction 546 560 - -
Vian9g00025 747 MobiDBLite consensus disorder prediction 510 532 - -
Vian9g00025 747 FunFam serine/threonine-protein kinase BLUS1 isoform X1 103 335 - -
Vian9g00025 747 Coils Coil 673 714 - -
Vian9g00025 747 Gene3D Transferase(Phosphotransferase) domain 1 103 335 - -
Vian9g00025 747 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Vian9g00025 747 MobiDBLite consensus disorder prediction 434 560 - -
Vian9g00025 747 CDD STKc_OSR1_SPAK 20 283 - -
Vian9g00025 747 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vian9g00025 747 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 706 IPR047173 GO:0043539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00025 Vian-Chr9 259996 271071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00025 11 693 MAP Kinase Kinase Kinase Kinase AT1G79640 64.173 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vian9g00025 Pkinase 6.9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00025 K08835 - gmx:100780339 1190.64