Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00024 ATGAAGCTCACGGTGAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCCTCCGACACTGTTATGGCTGTCAAGAAGAATATTGAAGATGTACAGGGCAAAGATAATTACCCGTGTGGTCAGCAATTGTTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGTTGAGAACAAAGTCTCTGAAGATGGCTTTCTTGTTGTTATGCTTAGCAAGAGTAAAGCATCAGGCTCTTCTGCAGCTCCATCTGTTCAGTTTTCTTTCTCTGTATTAAATATGGTGAAATTATGTCAGCCTGCCAGCAGTCCTGCTACAACTGTATCAACATCCAATTCCAACCCAGCTCCTGATCCTCCAGTGCAGACTCAGGCTGCGAACAACAGCACATCTAGCACGGATGCCCCAATTACCAATTTTTGTCAGCTTAAATTTTCTGTCGTACATGTCTGGATTGAGAAATCTTTGTTCTTTTGTGTGCCTGTATTTCAAAAGGGAATCCCTGAACCAGCAGAAGTTGCTGTGCCAGTTCCTAACTACCCAGGTAGTCAAACAACTGAAACAGCTGGGATTCCTTCTGGAGCAGTTCCTGTAGGACCTAATTCATCTCCCTTAAATATGTTTCCTCAGTTTCAAGCTTTGCGTTCAATGGTGCAATCCAATCCACAAATTCTCCAGCCTGTGCTTCAAGAACTGGGTAAGCAGAATCCTGGTCTTTTAAGAATGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGAGATATATTTGACCAACCTGAGCAAGACATGCCTCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGGAAGGCTTGAGGCAATGGGATTTGATAGAGCTTCGGTGATAGAGGCATTTTTGGCATGTGACCGTGACGAGCAATTGGCAGCAAACTACTTATTGGAGAATGCTGGAGACTTTGAAGATTAA 993 0.433 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFLVVMLSKSKASGSSAAPSVQFSFSVLNMVKLCQPASSPATTVSTSNSNPAPDPPVQTQAANNSTSSTDAPITNFCQLKFSVVHVWIEKSLFFCVPVFQKGIPEPAEVAVPVPNYPGSQTTETAGIPSGAVPVGPNSSPLNMFPQFQALRSMVQSNPQILQPVLQELGKQNPGLLRMIQEHHGEFLQLINEPVDGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00024 330 MobiDBLite consensus disorder prediction 106 135 - -
Vian9g00024 330 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Vian9g00024 330 FunFam UV excision repair protein RAD23 homolog 277 325 - -
Vian9g00024 330 FunFam UV excision repair protein RAD23 1 80 - -
Vian9g00024 330 SUPERFAMILY XPC-binding domain 205 268 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vian9g00024 330 SUPERFAMILY UBA-like 265 327 IPR009060 GO:0005515
Vian9g00024 330 SMART CBM 202 246 IPR006636 -
Vian9g00024 330 Gene3D - 206 262 IPR036353 GO:0003684|GO:0006289|GO:0043161
Vian9g00024 330 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Vian9g00024 330 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 284 324 IPR015940 -
Vian9g00024 330 Pfam XPC-binding domain 211 260 IPR015360 GO:0003684|GO:0006289|GO:0043161
Vian9g00024 330 CDD Ubl_Rad23 1 74 - -
Vian9g00024 330 Pfam UBA/TS-N domain 286 321 IPR015940 -
Vian9g00024 330 SMART ubq_7 1 75 IPR000626 GO:0005515
Vian9g00024 330 Gene3D - 1 80 - -
Vian9g00024 330 Gene3D - 277 325 - -
Vian9g00024 330 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 319 - -
Vian9g00024 330 SMART uba_6 286 323 IPR015940 -
Vian9g00024 330 PRINTS DNA repair protein Rad23 signature 312 327 IPR004806 GO:0006289
Vian9g00024 330 PRINTS DNA repair protein Rad23 signature 297 311 IPR004806 GO:0006289
Vian9g00024 330 PRINTS DNA repair protein Rad23 signature 231 253 IPR004806 GO:0006289
Vian9g00024 330 PRINTS DNA repair protein Rad23 signature 280 296 IPR004806 GO:0006289
Vian9g00024 330 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00024 Vian-Chr9 248070 254407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00024 1 100 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 33.000 5.10e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00024 K10839 - gmx:100819019 461.455