Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g00001 ATGCTTCCAGGAACTTGGGCTTATGTTAGTGTCGGTGCCTTTGGAAGAGCAATAATTCAAGATGAATCTGAACTTAGTAATATATTTGGAGGAAACAATCAGCTGTTAACTCTTGGGCTGGGACTGTTGGCCACTGCATTGGCTGCTACATATGTCACACGACTTGCAAAGGAGGAGGGAGTTCGAAAAAGCAAAGCCAAAAGAACTGTTTCTTTGAAATTCATCTTCTCTTCTCCGTATGTTCGTTGTGCGATGAACCAAACCAAACGCGGGCTTGTGAGGCTGATACTCTTCCGCGAACACATTTATCTTCATCTCACTCAGTCTTCTTCCAAAGTTCTCTTAGCTTGGAATGCGGTTGAACGTGATGAGGACTTTAAAGCATGGAGCACTGGACTAGAGGAGTGGAGAGAGGAGTGGAGAGTAGAGTGTCTATTGTCCTGCCTGCCTTCCAGTCCATCAAGTCATTACCCTCCGAGTTCAAGTTTGCCAACAATCCAAACCCTCTGGTTGTGGAAAAACATGGAGATGTCAAATGTAGACACACCAATCCAATTTGATGAAATGGTTTTGAGAAACATATCAGGATCATCATTAAAGGGGTTTCTTGCACCAGAGTTGGGGCAACTCACCCACTTGCAAGAACTAATTTTGCACGGAAACAATCTCATTGGAACAATACCTAGAGAATTGGGCGACTTGAAATATCTCAGGGTGCTTGATCTAGGAATGAATCAGTTAACAGGACCAATTCCTCCAGAGTTTGGAAATCTAACTCAAGTTGTGAAAATAATCTTGCAGTCCAACGGGTTGACTGGTAGGCTACCTCCAGAGCTTGAAAACTTGAGATTCCTTCAAGAACTTCAGCTGGATAGGAATAGACTTCAAGGGCCTATTCCTGCTGGCGATAGCTCAAATTTTGCTTCAAATATGCATGGAATGTATGTGTCCAAGGAGAATGTAACTGGCTTCTGTCGTTCGTCTCAGTTGAAAGTAGCAGACTTCTCATATAATTTTTTAGTTGGTAGCATACCCAAATGCTTGCAGTATCTTCCGAGGTTAAGCTTTCAAGGGAATTGCATCCAGAGCCATGATATAAAGCAGCGACCTCCTATACAGTGTGCGGGTGCTTCTCCTGCCAGTGCCAAGAGTCAGCCAGTGGTGAATCCAAGTCACCAACCTACTGAATATGTGTCCAAGCATCATGGAGCGTCAAAACCTGTTTGGCTTTTGGCTCTAGAAATAGTAACTGGGACTATGGTAGGCTCTCTCTTTCTGGTTGCTGTTCTTGCTGCTTTTCTGAGATGTAACAAAAAATCATCTATTATTATTCCTTGGAAAAAATATGGAAGCCAGAAAGATCAGACGGCAGTATATATAGACCCTGAGATGTTGAAGGATGTGAGAAGGTATAGCAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGACAGTGTGGTTTACAAGGGAACAATGAAAGGTGGACCTGAGATTGTTGTGATTTCCCTCTGCATCAGGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGACTTGGCAAAGTTAAATCATGAGAATATAGGAAAACTACTTGGTTACTGTAGAGAAGACACTCTATTTACAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTCCATGATCACCTTCATTGTTATGAAGAAGGACGCCAATTCTCATGGACACGGTGTATGAAGATTGCCATAGGCATTGCGCGTGGACTCAAGTATTTGCATACCGAAGTGGAGCCTCCATTTACTATCTCAGAACTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGTGTTGTGTTCGTGTGGAATTGGAATTTGTGTCCCCCGAGAATGTTGCAAAAAAGTAG 1929 0.4292 MLPGTWAYVSVGAFGRAIIQDESELSNIFGGNNQLLTLGLGLLATALAATYVTRLAKEEGVRKSKAKRTVSLKFIFSSPYVRCAMNQTKRGLVRLILFREHIYLHLTQSSSKVLLAWNAVERDEDFKAWSTGLEEWREEWRVECLLSCLPSSPSSHYPPSSSLPTIQTLWLWKNMEMSNVDTPIQFDEMVLRNISGSSLKGFLAPELGQLTHLQELILHGNNLIGTIPRELGDLKYLRVLDLGMNQLTGPIPPEFGNLTQVVKIILQSNGLTGRLPPELENLRFLQELQLDRNRLQGPIPAGDSSNFASNMHGMYVSKENVTGFCRSSQLKVADFSYNFLVGSIPKCLQYLPRLSFQGNCIQSHDIKQRPPIQCAGASPASAKSQPVVNPSHQPTEYVSKHHGASKPVWLLALEIVTGTMVGSLFLVAVLAAFLRCNKKSSIIIPWKKYGSQKDQTAVYIDPEMLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIVVISLCIREEHWTGYLELYFQRDLAKLNHENIGKLLGYCREDTLFTRMLVFDYASNGTLHDHLHCYEEGRQFSWTRCMKIAIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKCCVRVELEFVSPENVAKK 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g00001 642 PANTHER PROTEIN MALE DISCOVERER 2 188 624 - -
Vian9g00001 642 FunFam Inactive receptor-like serine/threonine-protein kinase 455 559 - -
Vian9g00001 642 SUPERFAMILY Protein kinase-like (PK-like) 460 624 IPR011009 -
Vian9g00001 642 MobiDBLite consensus disorder prediction 378 396 - -
Vian9g00001 642 ProSiteProfiles Protein kinase domain profile. 481 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g00001 642 Pfam Protein tyrosine and serine/threonine kinase 529 599 IPR001245 GO:0004672|GO:0006468
Vian9g00001 642 Gene3D Transferase(Phosphotransferase) domain 1 560 627 - -
Vian9g00001 642 MobiDBLite consensus disorder prediction 374 396 - -
Vian9g00001 642 SUPERFAMILY L domain-like 148 355 - -
Vian9g00001 642 Gene3D Ribonuclease Inhibitor 258 376 IPR032675 -
Vian9g00001 642 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 209 302 - -
Vian9g00001 642 Gene3D Phosphorylase Kinase; domain 1 454 559 - -
Vian9g00001 642 Gene3D Ribonuclease Inhibitor 108 257 IPR032675 -
Vian9g00001 642 Pfam Leucine Rich Repeat 237 258 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g00001 Vian-Chr9 5080 11541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g00001 181 626 Receptor kinase-like Gene Family AT5G65710 28.480 1.99e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vian9g00001 PK_Tyr_Ser-Thr 3.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g00001 - - gmx:100794714 783.482