Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01676 ATGAAGACGCATCCTCCGCAGCCCGACGGTGGCTCCGCCGCTCCCAATCCCAATCCCTCCCAAGAGAGCAGAAGCATAAACCCGGAGCTGTGGCAAGCTTGTGCAGGGCCTTTGGTTAATCTTCCTCCCTCCGCCACACATGTCATCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCATCTCTCAAGAAAGATGTTGACGCTCAAATTCCCAACTATCCCAATCTTCCCTCAAAGTTACTCTGTGTCCTTCACAATCTCACTCTGCATGCTGATCCCGAAACAGATGAAGTATACGCTCAGATGACGCTTCAACCGGTCCCTTCCTTCGACAAGGATGCTCTGTTGAGATCGGATCTTGCTCTCAAGTCCACCAAGCCACAACCCGACTTCTTCTGTAAACAGCTCACCGCAAGTGATACCAGCACTCACGGAGGTTTCTCAGTGCCCCGTCGTGCCGCCGAGAAGATTTTCCCTCATCTTGATTACTCTATGCAACCTCCTGCGCAAGAACTCGTCGCCAGGGATTTGCACGACAATGTTTGGACATTCCGCCACATATACCGTGGACAACCAAAACGGCACTTGCTTACTACTGGATGGAGTCTATTTGTCAGCGGAAAGAGGCTATTTGCCGGAGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATCAGACGAGCTAACAGGCAACCCACCAATATATCTTCGTCAGTACTATCCAGTGATAGTATGCACATTGGAATTCTTGCCGCAGCGGCTCATGCAGCCGCAAACAGTAGCCCCTTCACCGTCTTTTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGTCGGTGTGCAGCCACCAACCGTCACTTGGCATGCGTTTTCGAATGATGTTTGAAACTGAAGACTCGGGAACGAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCTGTGCGATGGAAAAACTCTCAATGGCGAAATTTGCAGGTTGGTTGGGATGAGTCAACTGCCGGAGAAAAGCGTAGCAGGGTCTCAATCTGGGAAATCGAACCAGTAACTGCTCCATTTTTCCTCTGCCCGCCTCCATTCTTTAGATCCAAGAGGCCAAGACAACCTGGAATGCCGGATGATGACTTATCTGATTTTGATAACATTTTCAAGCGGACAATGCCTTGGCTTGGTGATGAAATGTGCATGAAGGATCCCCAAGGTCTCCCTGGCCTGAGCTTAGCTCAATGGATGAACGTGCAGCAACATCCTGCACTGGCTAGCTCGTTGCAGCCAAATTTTGCACCTTCCTTACCGGGATCTATTTTGCAAAATATTCCTGGGGCTGATATATCTCGGCAGCTGGGATTTTCCGCTCCACAAATTTCTCAGTCAAACAATGTAGCCTTCAATACTCACAGACTACTTCAGACTGCTCAACAGCTGGATCAACTTCAGAAGCTACCATCTACATCTAGCACATTAGGAGCAGTCCTGCCACCACAGCAACAGTTGGGTGATATCAGTCAACAATCAAGGCAGAACTTGGCAAATCAAACTATACCACAGAGTCAAGTTCAGGCCCAACTCTTGCATCCCCAAAACATTGTCCAAACCAACAATATTCTTCAACAGCAGCAACCATCCATTCAAAACCATCAAATGCATAGAAGCCTCTCTCAGAATCCATCACAGCAGCAGACAATTATAGGTCAGAGTCAACAACAAAATTTGATCCAGTCCCCTATCCCTGATCATGTTCAACAATTACAGATGTCCGACAATCAGATTCAGTTGCACTTGTTACAGAAGCTTCAACAACAAAAACAAACGCACTTGGCACAGCAAACAGTGTTGCAGCAGCCTACTCAGCTTACTCAAATCCAGGATCAGCAGAGACAGATTTTAGATAAAACACATAACTTGTCTAGAGCACTAACACCTGGTCAAGTTCTAGAAATACCTCCTATGCTTCAAAATTCACTGCCTGAGGCTAATTCTATCTCTAATCAGATCACAAAGGCTAATTTCCAGAACAGTATTCAATTCCCTCAGCAGCCCAAGCTTCAACAGCAGCAACCTGGCTTGCTGTCTGGAATGTCTGGCCACATGGGACTTCTTCCTACCCCTACTACAAATAACCAACTTTCTGCTGCTGGCAGTAGTATACTGAATGGAGCAGCTGGGGCAGGGCAATCTGTAATTACTGATGATATTCCATCTTGCTCGACCTCGCCTTCTGCAAATAACTGTGCCAGTGCACTTCCACCATTGATAAATTCTCGATTGCAGAGAAACACAATAGTAGGGGATGACATGGCTCAGTCTGCTTCAACAATCTTGAGTTCAAGTGCGTTAGAAACTATGTCATCAAATGCAAACTTGTTGAAAGATTTACAACCGAAGTCTGAAGTTAAACCTTCTCTGAATATTTCCAAAAGTCAGAATCAAGGGCTTTTTGGCCTTCAGTCATACTTGAATGGTAGTGCTGTCCATACTGATTGTTTGGACACATCATCTTCTACAACATCAGTTTGCCTTTCTCAGAGTGACGCTCATATGCATCAGAATAATAATCCATTAGCTTACAATCCACATCCTATGTTGTTTAGAGACAATAGTCAAGATGGGGAAGTTCAGGCAGATGCTAGGGGCAATATTCCATATGCCAACAACATTGATAGCCAAATGGGAATGCCACTGAATCCAGATTCCCTTTTAACCAAGGGCACATTGGGGTTGGGGAAGGATTTGTCTAATAACTTCTCTTCAGAAGCCCTACTTGGTAATTATGAAAATAACAGAGATGCTCACCAGGAACTTTCATCTTCAATGGTTTCACAGTCATTTGGAGTCCCTGATATGGCCTTCAATTCAATTGATTCCACAATAGATGATAGTAGCTTTTTGAATAGGGGTGCATGGGCTCCACCACCAGCACCGCCTCCACCACCTCTGCCACCAGCACAGTTTCAGCGGATGAGGACGTATACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACGCGGTATTCAGGTTATGAAGAGCTTAAACAGGATCTAGCTCGTAGATTTGGAATAGAGGGGCAGCTGGAGGATCGGCAGAGGATAGGTTGGAAACTTGTCTATGTAGATCACGAGAGTGATGTTCTACTGGTGGGAGATGACCCTTGGGAGGAGTTCGTGAACTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTGCAACAGATGAGCTTGGATGGAGATTTTGGCAATGGCGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGACGGTGGGAATACCTAA 3351 0.4593 MKTHPPQPDGGSAAPNPNPSQESRSINPELWQACAGPLVNLPPSATHVIYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCVLHNLTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSTKPQPDFFCKQLTASDTSTHGGFSVPRRAAEKIFPHLDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANSSPFTVFYNPRASPSEFVIPLAKYYKSVCSHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGEKRSRVSIWEIEPVTAPFFLCPPPFFRSKRPRQPGMPDDDLSDFDNIFKRTMPWLGDEMCMKDPQGLPGLSLAQWMNVQQHPALASSLQPNFAPSLPGSILQNIPGADISRQLGFSAPQISQSNNVAFNTHRLLQTAQQLDQLQKLPSTSSTLGAVLPPQQQLGDISQQSRQNLANQTIPQSQVQAQLLHPQNIVQTNNILQQQQPSIQNHQMHRSLSQNPSQQQTIIGQSQQQNLIQSPIPDHVQQLQMSDNQIQLHLLQKLQQQKQTHLAQQTVLQQPTQLTQIQDQQRQILDKTHNLSRALTPGQVLEIPPMLQNSLPEANSISNQITKANFQNSIQFPQQPKLQQQQPGLLSGMSGHMGLLPTPTTNNQLSAAGSSILNGAAGAGQSVITDDIPSCSTSPSANNCASALPPLINSRLQRNTIVGDDMAQSASTILSSSALETMSSNANLLKDLQPKSEVKPSLNISKSQNQGLFGLQSYLNGSAVHTDCLDTSSSTTSVCLSQSDAHMHQNNNPLAYNPHPMLFRDNSQDGEVQADARGNIPYANNIDSQMGMPLNPDSLLTKGTLGLGKDLSNNFSSEALLGNYENNRDAHQELSSSMVSQSFGVPDMAFNSIDSTIDDSSFLNRGAWAPPPAPPPPPLPPAQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHESDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01676 1116 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 623 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian8g01676 1116 FunFam Auxin response factor 999 1093 - -
Vian8g01676 1116 SUPERFAMILY CAD & PB1 domains 1017 1082 - -
Vian8g01676 1116 SUPERFAMILY DNA-binding pseudobarrel domain 123 262 IPR015300 -
Vian8g01676 1116 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian8g01676 1116 Gene3D - 999 1093 - -
Vian8g01676 1116 FunFam Auxin response factor 297 368 - -
Vian8g01676 1116 Pfam B3 DNA binding domain 133 234 IPR003340 GO:0003677
Vian8g01676 1116 FunFam Auxin response factor 131 235 - -
Vian8g01676 1116 MobiDBLite consensus disorder prediction 1 24 - -
Vian8g01676 1116 ProSiteProfiles PB1 domain profile. 1004 1088 IPR000270 GO:0005515
Vian8g01676 1116 Gene3D - 131 234 IPR015300 -
Vian8g01676 1116 SMART B3_2 133 235 IPR003340 GO:0003677
Vian8g01676 1116 ProSiteProfiles B3 DNA-binding domain profile. 133 235 IPR003340 GO:0003677
Vian8g01676 1116 Gene3D - 297 368 - -
Vian8g01676 1116 CDD B3_DNA 132 224 IPR003340 GO:0003677
Vian8g01676 1116 MobiDBLite consensus disorder prediction 555 585 - -
Vian8g01676 1116 Pfam AUX/IAA family 1003 1089 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01676 Vian-Chr8 36075059 36080487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01676 22 476 B3 DNA Binding Superfamily AT1G19220 71.397 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian8g01676 B3 1.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01676 - - ccaj:109803454 1892.09