Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01638 ATGAGAATTTCGATTGGGTTCATACCATTGCTGACACTTTGTGTTGCCCTCTTAGCTTTGGTTCAGGCACAACAACAAATAGGCTTCATAAGCATTGATTGCGGTAGTTCGGAAAATTGGTACACAGATGATACAACTCAAATAAAGTACACTGGTGATGGAGGGTATATACAGAGTGGGGTTATTTGGAACATCTCCACTGAATATGCTTACCCAAACAATCCCAATCTGCCATATGTACTCTCAGATCTCAGAAGTTTTCCCAACGGAGAAAGGAACTGTTATAGTATAACAGGTGTGAGAAGTGACAGTTTATATTTGATCAGGGCTTCCTTCTTGTATGGAAACTATGATGGAGAAAACAAGCTTCCAGAGTTTGATCTCTATGTTGATGTCAATTTCTGGTCCACAGTGAAATTCAGAAAGGCCTCGGAGGAAGTTGTACTTGAAATAATCAGTTTGGCACAATCAGATGTGACATATGTTTGCCTTGTGAACAAGGGAGCTGGAATTCCTTTTATCTCAGGATTAGAGTTTAGACCAGTTAATAGTTCTGTTTATAACACTGAGTTTGGGGAATCTGCTTCGCTAACCCTTTTCAAACGATGGGACATTGGGTCAATCAATGGAAGTGGTAGATACAAGGATGATATTTATGATAGAATCTGGTCCCCTTTGAATTCTTCATCCTGGGATTCTGTCAGCACTTCCACAGCAATAAATGTCAACGATGATGGCTTTAGACCACCATTTGAAGTTATTAGTACTGCTGCTAGACCAAAGAATGGCAGTGATACTTTGGAGCTTTCTTGGACCCCAGATGATCCAAGTTTGAAATTTTATGTGTACTTGTACTTTGCTGAAGTGGAGCAGCTTGAGAAAACCCAGTTGAGGAAATTCAATATATCTTGGAATGGATCTCCATTGTTTGATTCCATAGTACCCCGTCACTTGTTTGCAACCACCCTTTCTAATTCGAAATCCTTGGTGGCAAATGAACATCGTATTTCCATACGCAAAACAGAAGATTCAACCCTTCCACCCATTCTTAATGCAGTTGAGATTTATGTAGTGAGGCTAGATTCACTAGCAACATTTCAACAAGATGTTCATGCTATGGCGGATATAAAGGAAAGCTATAAAATTCAAAGAAATTGGATGGGTGATCCATGTGAGCCAAAGAATCAATCTTGGGAAGGCTTAATATGCAACTATAGCACTTCAGTTCCTCCCAGAATTATATCTCTGAATATGAGCTCCAGCAGTTTGAGCGGAGCATTAACTTCTGCCATTTCCAATCTCTCGTCGCTGGAATCTTTGGACTTACACAACAATAGCTTAACGGGAGCAGTGCCTGAGTTCTTGGAAGAATTGAAATCCCTTAAATATTTGGATCTAAAGTACAATCTATTTTCTGGTTCAGTTCCTGTCACTCTTTTAGAAAGATCAAAGACTGGGTTACTTACATTGAGGGTGGATGATCAAAATCTCGGTGACTCAGGAGGGAGCAATAAAACCGTTAAAATTGTTGTTCCCATAGTTGTATCAGTATCAGTTTTAGTTATATTGGTTGCTTTCATTCTCTTTAGGAAACTCAGAAGAAATGAACGATCAGATGAGGAGATCAGTATGCTGAACAAAAGAGGGAAAAATGTAACAACGAAGAACTGGCAATACACGTATTCAGAAGTCTTGGACATCACCAACAACTTTGAAAAGGTCATTGGCAAGGGAGGATTTGGAATTGTGTATAGTGGGCAGATGAAAGATGGCAAAGAAGTTGCAGTTAAGATTCTTTCTCCATCATCATCTCAGGGCCCAAAAGAATTTCAAACTGAGGCTGAGCTTTTGATGACAGTTCATCACAAAAATTTGGTATCCTTCGTTGGTTATTGTGATGATGATAACAAGATGGCTCTCATATACGAGCACATGATCAATGGCAGCCTGAAAGATTTTCTCTTTCTCTCAGATGGAAATTCAGATTGCTTGAGTTGGGAAAGGAGAATACAGATAGCAATCGATGCCGCTGAGGGGTTGGATTACCTACACCATGGTTGCATGCCACCAATAGTACACAGGGATGTAAAGACAGCAAACATTCTTTTAAGTCAAGATTTAGAAGCCAAGATAGCAGACTTTGGTCTCTCCAAGGAGTTTAAGAAAGATAACCAAAAACAACAATCTCATGTGATTGATACTGATGCTACAAATGACAAATCTGCAATAATGGGCACAACAGGGTACCTTGACCCAGAGTACTACAAATTAGGGGGTTTGAATGAGAAAAGTGACATCTATAGCTTTGGAGTTGTTCTGCTTGAATTAATCACAGGTCGCCCTGCAATATTTAAAGGCAACACAATAATGCACATACTTGAGTGGATAAGACCTGAGCTTGAAAGAGGAGAATTGAATAAAATTTTAGATCCAAGGCTGCAAGGAAAATTTGGTGCAAATTCTGGGTGGAGAGCTTTAGGAATAGCTATGCAATGCTCTGCATCAACCTCCATTCAGAGACCTACAATGAGTGTTGTCATAGCAGAGTTAAAACAGTGTTTGACAATGGAATCTCCTAGTAACACTGAAACATTTGTGTCCCCTCCAAAACAAATCTACACTGAATTCTACAGTTCATCAGAAGCACAGTCTTATGATAGTGAATCTTTCACCTATCCTTTTCCAAGATAG 2691 0.395 MRISIGFIPLLTLCVALLALVQAQQQIGFISIDCGSSENWYTDDTTQIKYTGDGGYIQSGVIWNISTEYAYPNNPNLPYVLSDLRSFPNGERNCYSITGVRSDSLYLIRASFLYGNYDGENKLPEFDLYVDVNFWSTVKFRKASEEVVLEIISLAQSDVTYVCLVNKGAGIPFISGLEFRPVNSSVYNTEFGESASLTLFKRWDIGSINGSGRYKDDIYDRIWSPLNSSSWDSVSTSTAINVNDDGFRPPFEVISTAARPKNGSDTLELSWTPDDPSLKFYVYLYFAEVEQLEKTQLRKFNISWNGSPLFDSIVPRHLFATTLSNSKSLVANEHRISIRKTEDSTLPPILNAVEIYVVRLDSLATFQQDVHAMADIKESYKIQRNWMGDPCEPKNQSWEGLICNYSTSVPPRIISLNMSSSSLSGALTSAISNLSSLESLDLHNNSLTGAVPEFLEELKSLKYLDLKYNLFSGSVPVTLLERSKTGLLTLRVDDQNLGDSGGSNKTVKIVVPIVVSVSVLVILVAFILFRKLRRNERSDEEISMLNKRGKNVTTKNWQYTYSEVLDITNNFEKVIGKGGFGIVYSGQMKDGKEVAVKILSPSSSQGPKEFQTEAELLMTVHHKNLVSFVGYCDDDNKMALIYEHMINGSLKDFLFLSDGNSDCLSWERRIQIAIDAAEGLDYLHHGCMPPIVHRDVKTANILLSQDLEAKIADFGLSKEFKKDNQKQQSHVIDTDATNDKSAIMGTTGYLDPEYYKLGGLNEKSDIYSFGVVLLELITGRPAIFKGNTIMHILEWIRPELERGELNKILDPRLQGKFGANSGWRALGIAMQCSASTSIQRPTMSVVIAELKQCLTMESPSNTETFVSPPKQIYTEFYSSSEAQSYDSESFTYPFPR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01638 896 FunFam Leucine-rich repeat receptor-like kinase 368 499 - -
Vian8g01638 896 SUPERFAMILY L domain-like 378 481 - -
Vian8g01638 896 ProSiteProfiles Protein kinase domain profile. 569 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01638 896 Gene3D Ribonuclease Inhibitor 361 486 IPR032675 -
Vian8g01638 896 SMART serkin_6 569 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01638 896 Pfam Leucine rich repeat 415 470 IPR001611 GO:0005515
Vian8g01638 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Vian8g01638 896 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 645 864 - -
Vian8g01638 896 Pfam Malectin-like domain 32 357 IPR024788 -
Vian8g01638 896 CDD STKc_IRAK 575 852 - -
Vian8g01638 896 PANTHER OS07G0107800 PROTEIN-RELATED 30 857 - -
Vian8g01638 896 Gene3D Phosphorylase Kinase; domain 1 543 644 - -
Vian8g01638 896 SUPERFAMILY Protein kinase-like (PK-like) 553 886 IPR011009 -
Vian8g01638 896 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Vian8g01638 896 FunFam Leucine-rich repeat receptor-like protein kinase 547 644 - -
Vian8g01638 896 Pfam Protein tyrosine and serine/threonine kinase 571 848 IPR001245 GO:0004672|GO:0006468
Vian8g01638 896 Gene3D Transferase(Phosphotransferase) domain 1 645 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01638 Vian-Chr8 35877050 35882779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01638 10 857 Receptor kinase-like Gene Family AT4G29180 52.194 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vian8g01638 Malectin_like 1.9e-103 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01638 - - gmx:100793137 1443.71