Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01619 ATGTCAAACTTGCATTACTTGTTCATCTTTTTAGCAGTTGTTCTTCTTTTTCTGCAAAATCCCAGTAGAGTACATTGCCATACCAAGGGAATTAGACCAAGACGTTCTGCGGGTAAAGGGTTATTGACCAACATGACTAGAGTGCAGTATTCTGAAGACCAATTCATGAAATGGGTGAACTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGGCAGTCAAAAATAAGCTTGTGGCTTCCTACACTTTGCACGTTGATAAGAATCCTAGTGCTGGAGATTTTACCTCAATTCAAGAAGCCATCGATTCCCTTCCATTCGTCAATCTTGTTAGAGTGCTCATAAAAGTCCATGCAGGTGTCTACACGGAGAAGGTTAACATTCCTGCTTTCAAATCCTACATAACAATAGAGGGAGATGGTGCAGATGAAACCATTGTTAAATGGAGTGACACTGCTCAAACACCTGGTTCAAATGGGAGGCCACTGGGAACCTATGGTTCAGCAACTTTTGCTGTGAATTCGCCTTATTTCATTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCAATTGGAAAGCAAGCGGGATGTCACGTGCATGCGATAGCACAGAACACGGGGGCAGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGATCAGGGGCACTATACCTTGGAAGGGCATGGGGACCCTTTTCTCGCGTGGTCTTTGCTTACACGTATATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAACAACTGTTTTCTATGGGCAGTACAAGTGCACAGGACCTGGTTCAAGTTTTGCAGGGAGAGTTTCATGGTCAAGAGAACTCACTGATGAGGAAGCTACACCTTTTCTGTCACTTAGCTTTATTGATGGGACTGAATGGATCCAATTGTAG 984 0.4421 MSNLHYLFIFLAVVLLFLQNPSRVHCHTKGIRPRRSAGKGLLTNMTRVQYSEDQFMKWVNFVGSLKHSVFKAVKNKLVASYTLHVDKNPSAGDFTSIQEAIDSLPFVNLVRVLIKVHAGVYTEKVNIPAFKSYITIEGDGADETIVKWSDTAQTPGSNGRPLGTYGSATFAVNSPYFIAKNITFQNTTPVPAPGAIGKQAGCHVHAIAQNTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRETTVFYGQYKCTGPGSSFAGRVSWSRELTDEEATPFLSLSFIDGTEWIQL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01619 327 Gene3D - 200 327 IPR012334 -
Vian8g01619 327 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 201 326 - -
Vian8g01619 327 SUPERFAMILY Pectin lyase-like 78 326 IPR011050 -
Vian8g01619 327 Gene3D - 79 199 IPR012334 -
Vian8g01619 327 Pfam Pectinesterase 91 188 IPR000070 GO:0030599|GO:0042545
Vian8g01619 327 Pfam Pectinesterase 207 321 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01619 Vian-Chr8 35702971 35706810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01619 94 325 Carbohydrate Esterase AT5G47500 37.631 2.29e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01619 K01051 - qsu:112033938 517.694