Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01612 ATGGAACTGTTCACCTCATCATCATCATCATATCTTAAACTGCTGCTTCAGTCTATTGTGATCTTACTCCTGGTTTTTACGCGTGCAGACTCCGAATCTCAATCTCAGTTGCATGATCAAGAACATGCAATCTTACTGAGGATAAAGCAGTACCTTGAAAACCCTTCATATCTCAGTCACTGGACATCATCAAACATCGCTCACTGCTCTTGGCCAGAGATAACGTGTAGCAACGACGATTCTGTCACTGGATTGACATTGTCCAACAATAGCATCATTCAGACCATACCCTCTTTCATATGTGACCTCAAAAACCTCACACACGTTGATTTCTACAACAATCTGATTCCTGGGGAGTTCCCAACACATCTCCTCAATTGCTCCAAGTTGGAGTACCTAGACCTGTCTATGAACGACTTTGTTGGCAGCATCCCTCGTGACATTGGCAACTTATCTAATCTGCAGTTTCTTAACCTTGGTTACACCAATTTCTCTGGTGACATTCCTTCCAGCATTGGAAGTCTAAAGCAACTCACAAATCTTCAATTTCAGAACTGCCTATTGAATGGAACTATCCCCTCTGAGATTGGCAACTTGTCCAATCTTGAATTCTTGGATTTGTCATCTAACTCCATGTTCCCTCCTTCGAGGTTGCATGATAACTGGATGCGGTTGAGCAAGTTGAAGTTCTTTTTCATGTTTGACTGCAACTTGGTCGGGGAGATCCCTGAAACTATTGGAAACATGGTGGCTTTGGAGAGATTGGATCTATCGCAGAACGATTTAAGTGGTGAAATTCCCGGGGGCTTGTTCATGCTGAAGAATCTGAACATAATGTTTCTATCTAGAAACAAGCTTTCTGGGGAAATACCTGATGTGGTTGAAGCACTGAATTTGACCATCATTGATCTAACGCGAAATTCTCTCTCAGGAAAAATACCAGATGGTTTTGGAAAGCTTCAAAATTTAACTGGTTTGGCTTTGTCTTTAAATAACTTACATGGGGAGATACCACAGAGCATAGGCCTTCTTCCATCTCTGATAGATTTTAAAGTGTTTTCCAACAATTTATCAGGTACTCTTCCTCCTGACTTTGGCCGCCACTCAATGCTTAAAACCTTTTTGATTTCAAATAATAGTTTTAGTGGAAAGCTACCCGAGAACTTGTGCTATAATGGTCACTTGGAAAACTTAACTACCTATGAAAATCATCTTAGTGGGGAGTTGCCACAATCACTTGGTAATTGTAGTAGCCTGACAGATCTGAAAATTTATAGTAACGAGTTTTCTGGTAGCATTCCAAGTGGTCTTTGGACTTTCAATCTGTCAACTTTCATGGTGAGCCATAACAAGTTCACTGGTGAGCTTCCTGAGAGATTGTCCTCAACTATTTCGCGTTTGGAGATAGATTACAATCAGTTTTATGGTAGGATTCCAACTGGGGTGTCTTCATGGACTAATGTGGTTGTGTTTCAAGCCAGTAAGAACAACCTTAATGAGAGTATTCCAAGAGAGTTAACAGCTCTTCCAATGCTAACAACACTATTGCTTGATCAGAACCAGCTCACAGGGCCACTTCCGTCTGATATAATATCATGGAAGTCCCTTAGGAATCTAAATTTGCGACAAAACGAACTCTCTGGACATATTCCTGATTCAATTGGTCATTTACCTGATCTCAACCAACTTGATCTGTCAGAAAATCAGTTCTCGGGTCAAATTCCATCTCTTCCTTCCAGACTCACCAATCTCAATCTTTCCTCCAATTACTTGACAGGGAGGGTTCCAAGTGCATTTGAAAATTCTGCTTTTGAAACCAGCTTTTTGAACAATTCTGACCTCTGTTCTGATACCTCAGCACTGAATCTCAGGTCATGTAATCATAGCCCTCAAAGTGAAAGCAATGACTCATCTTGGTCTATTGCTTTGATCATAAGTCTGGTGGTAGTGGCCTGTTTCCTGGCTTTGTTGGCATCGTTCTTGATAATCAGATTTTACAGAAAAAGAAAGAGTGGATTGGATAGGTCATGGAAGCTCATTTCTTTCCAAAGGCTGAGTTTCACTGAATCAAACATAGTGTCATCACTCACAGAAAATAATATTATTGGCAGTGGTGGCTATGGTGCAGTATACCGCGCTGCAGTTGATGGTTTAGGCTATGTTGCTGTCAAGAAAATTTGGGACAACGAAAAGATAGACAAGAAGCTTGAGAGCTCATTTCACACCGAAGTTAAAATATTGAGCAGCATTCGTCACAAAAACATTGTGAAGTTGATGTGTTGTATCTCTAAAGAGGACTCTATGCTCCTTGTGTATGAGTATGTGGAAAACCACAGCCTTGACAGGTGGTTGCACAGGAAGAATAAGTCATCATCAGCTGTTTCAGAGTGGGCGTGGCGGCACCATCAATTAGGAAGCAACATAGAAGAGCTGCTAGACAAAGAAGTCATGGAATCCAGTTACTCAGGTGAAATGTGTAAGGTTTTCACACTAGGTCTCATGTGCACTGCAACACTTCCTTCTGCTAGACCATCCATGAAAGAGGTTCTACAAGTTTTGCTTTCTTGTGATGAATCATTTTCTAAGGGAGAGAGTAATATTTGCCACTGTGATGATGTTGTTCCCTTTCTTAAAAATTCAAGAAGAGAGCACAAGTTGGATATTGATAATGATAGCTAG 2679 0.4084 MELFTSSSSSYLKLLLQSIVILLLVFTRADSESQSQLHDQEHAILLRIKQYLENPSYLSHWTSSNIAHCSWPEITCSNDDSVTGLTLSNNSIIQTIPSFICDLKNLTHVDFYNNLIPGEFPTHLLNCSKLEYLDLSMNDFVGSIPRDIGNLSNLQFLNLGYTNFSGDIPSSIGSLKQLTNLQFQNCLLNGTIPSEIGNLSNLEFLDLSSNSMFPPSRLHDNWMRLSKLKFFFMFDCNLVGEIPETIGNMVALERLDLSQNDLSGEIPGGLFMLKNLNIMFLSRNKLSGEIPDVVEALNLTIIDLTRNSLSGKIPDGFGKLQNLTGLALSLNNLHGEIPQSIGLLPSLIDFKVFSNNLSGTLPPDFGRHSMLKTFLISNNSFSGKLPENLCYNGHLENLTTYENHLSGELPQSLGNCSSLTDLKIYSNEFSGSIPSGLWTFNLSTFMVSHNKFTGELPERLSSTISRLEIDYNQFYGRIPTGVSSWTNVVVFQASKNNLNESIPRELTALPMLTTLLLDQNQLTGPLPSDIISWKSLRNLNLRQNELSGHIPDSIGHLPDLNQLDLSENQFSGQIPSLPSRLTNLNLSSNYLTGRVPSAFENSAFETSFLNNSDLCSDTSALNLRSCNHSPQSESNDSSWSIALIISLVVVACFLALLASFLIIRFYRKRKSGLDRSWKLISFQRLSFTESNIVSSLTENNIIGSGGYGAVYRAAVDGLGYVAVKKIWDNEKIDKKLESSFHTEVKILSSIRHKNIVKLMCCISKEDSMLLVYEYVENHSLDRWLHRKNKSSSAVSEWAWRHHQLGSNIEELLDKEVMESSYSGEMCKVFTLGLMCTATLPSARPSMKEVLQVLLSCDESFSKGESNICHCDDVVPFLKNSRREHKLDIDNDS 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01612 892 FunFam Receptor-like protein kinase HSL1 isoform A 38 178 - -
Vian8g01612 892 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 293 848 - -
Vian8g01612 892 SUPERFAMILY Protein kinase-like (PK-like) 693 788 IPR011009 -
Vian8g01612 892 Gene3D Phosphorylase Kinase; domain 1 673 772 - -
Vian8g01612 892 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515
Vian8g01612 892 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 195 295 - -
Vian8g01612 892 Pfam Protein kinase domain 698 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01612 892 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Vian8g01612 892 Gene3D Ribonuclease Inhibitor 38 216 IPR032675 -
Vian8g01612 892 FunFam Receptor-like protein kinase HSL1 isoform A 303 626 - -
Vian8g01612 892 Gene3D Ribonuclease Inhibitor 367 635 IPR032675 -
Vian8g01612 892 Gene3D Transferase(Phosphotransferase) domain 1 773 872 - -
Vian8g01612 892 SUPERFAMILY L domain-like 223 582 - -
Vian8g01612 892 SUPERFAMILY L domain-like 42 295 - -
Vian8g01612 892 FunFam Kinase family with leucine-rich repeat domain-containing protein 678 774 - -
Vian8g01612 892 ProSiteProfiles Protein kinase domain profile. 696 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01612 892 Gene3D Ribonuclease Inhibitor 217 365 IPR032675 -
Vian8g01612 892 SMART LRR_typ_2 103 127 IPR003591 -
Vian8g01612 892 SMART LRR_typ_2 557 584 IPR003591 -
Vian8g01612 892 SMART LRR_typ_2 320 344 IPR003591 -
Vian8g01612 892 SMART LRR_typ_2 199 225 IPR003591 -
Vian8g01612 892 SMART LRR_typ_2 509 533 IPR003591 -
Vian8g01612 892 SMART LRR_typ_2 151 175 IPR003591 -
Vian8g01612 892 SMART LRR_typ_2 249 273 IPR003591 -
Vian8g01612 892 ProSitePatterns Protein kinases ATP-binding region signature. 702 725 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01612 Vian-Chr8 35642547 35645959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01612 794 853 Receptor kinase-like Gene Family AT5G25930 53.333 5.20e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian8g01612 Pkinase 9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01612 - - gmx:100798963 1251.88