Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01611 ATGCTATCATGCAATGAGTTTTCTGGCAACATTCCTAGTGGTCTTTGGACTCTCAACTTGTCAGATTTCATGGTGAGCAATAACAAGTTCACTGGTGAGCTTCCTGAGAGATTTTCCCCAACTATTTCACGCTTGGAGATAAGTCACAACCAGTTTTCTGGTAGAATTCCAACTGGGGTATCTTCATGGACTAACATGGTTGTGTTTAAAGCCAGCGAAAACTACCTCAATGGGAGTGTTCCAAAGGAGTTAACAAATCTTTCCATGCTAACAACTCTATTGCTTGATCATAACCATCTCACAGGGCCACTTCCATCAGATATAATATCATGGAAGTCCCTAGAGAATCTAAATTTGAGCCATAACCAACTCTCCGGAAAAATCCCAGATGAAATTGGTCAGTTGCCTGTCCTCAATCAGCTTGACCTGTCAGAAAACCAGTTCACAGGTCAAGTTCCTTCACTACTTCCTAGACTTACTAATCTCAACCTATCCTCTAATCATCTTACAGGGAAGGTTCCAAATGAGTTAGAAATCTCTGTGTATTCCACCAGCTTTTTGAACAATCCTGGCCTCTGTGCTGATACCTCAGTACTGAATCTAAGGCTGTGCAGTGTTGGTGCTGGCTTTGAAAAGAAAACCAAAGGCTCTTCTTGGTCTATTGCTTTGATTCTGTGTCTGGTGGCAGTAGCCTTCTTGTTGTCTTTGCTGATATCAATCTTGATTATCAAACTTTTCAGAAGAGGGAAACATGTGTTGGATAACTCATGGAAACTCGTCTCCTTTCAAAGGTTGAGTTTCACCGAATCAGACATAGTGTCATCAATGACAGAACACAATGTTATTGGAAGTGGTGGATTTGGCACAGTGTACCGTGTCCCTGTTGATGGTTTAGACTATATTGCTGTGAAAAAGATCTCAAGCAACAGAAAGTTAGACCGAAAGCTAGAGAGCTCGTTTCGTGCAGAAGTGAAAATACTGAGCAACATTCGTCATAAGAACATTGTGAAGTTGTTGTGTTGCATCTCTAATGAGGATTCTATGCTCCTTGTGTATGAGTATTTGGAAAACCGTAGCTTAGACAGGTGGCTGCACAATAAGGACAAGTCATCAACTGTGTCGGTTTCAGTCGATCATTTTGTGCTTGATTGGCCAAAGAGATTGGAAATTTCCATTGGGGTTGCTCATGGTCTGTGCTACATGCACCATGATTGCTTTCCACCGATTGTTCATAGAGATGTAAAATCAAGCAACATCCTTTTGGATGCTCAGTTCAATGCAAAAGTAGCTGATTTTGGTCTGGCTAGGATGTTAATGAAGCTAGGGGATCTTGCTACCATGTCTTCAGTGGTTGGCTCATTTGGCTACATGGCTCCAGAATATGTTCAAACAAGGCGAGTTAGTGAGAAGATTGACGTGTTCAGCTTTGGGGTTGTACTGCTGGAGCTGACAACAGGTAAAGAAGCTAATTATGGTGATGAACATTCTTCCCTTGCAGAGTGGGCATGGCGTCACATTATCGTGGGAAGCAAAATAGAAGAGCTGCTAGACAATGATTTCATGGATCCAAGTTACACAAATGAAATGTGCAGTGTTTTCAAACTTGGGGTCTTGTGCACTTCCACACTTCCTGCTAATAGGCCTTCCATGAAAGAGGTGCTACACATGTTGGTCACCATAGGAGAAGGGCTTGCTTTTGGAGAGGGGAATGTTAGCCACTTTGATGGTGTTCCTCTTCTTAAGAATTCAAGATGGGAGTGTAGGTTTGATGCTATTGATAATGATAGTGATTAG 1794 0.4203 MLSCNEFSGNIPSGLWTLNLSDFMVSNNKFTGELPERFSPTISRLEISHNQFSGRIPTGVSSWTNMVVFKASENYLNGSVPKELTNLSMLTTLLLDHNHLTGPLPSDIISWKSLENLNLSHNQLSGKIPDEIGQLPVLNQLDLSENQFTGQVPSLLPRLTNLNLSSNHLTGKVPNELEISVYSTSFLNNPGLCADTSVLNLRLCSVGAGFEKKTKGSSWSIALILCLVAVAFLLSLLISILIIKLFRRGKHVLDNSWKLVSFQRLSFTESDIVSSMTEHNVIGSGGFGTVYRVPVDGLDYIAVKKISSNRKLDRKLESSFRAEVKILSNIRHKNIVKLLCCISNEDSMLLVYEYLENRSLDRWLHNKDKSSTVSVSVDHFVLDWPKRLEISIGVAHGLCYMHHDCFPPIVHRDVKSSNILLDAQFNAKVADFGLARMLMKLGDLATMSSVVGSFGYMAPEYVQTRRVSEKIDVFSFGVVLLELTTGKEANYGDEHSSLAEWAWRHIIVGSKIEELLDNDFMDPSYTNEMCSVFKLGVLCTSTLPANRPSMKEVLHMLVTIGEGLAFGEGNVSHFDGVPLLKNSRWECRFDAIDNDSD 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01611 597 Pfam Protein kinase domain 278 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01611 597 SUPERFAMILY L domain-like 2 178 - -
Vian8g01611 597 Gene3D Transferase(Phosphotransferase) domain 1 355 565 - -
Vian8g01611 597 Gene3D Phosphorylase Kinase; domain 1 253 354 - -
Vian8g01611 597 PRINTS Leucine-rich repeat signature 156 169 - -
Vian8g01611 597 PRINTS Leucine-rich repeat signature 114 127 - -
Vian8g01611 597 PANTHER LEUCINE RICH REPEAT KINASE 2 44 561 - -
Vian8g01611 597 ProSiteProfiles Leucine-rich repeat profile. 113 135 IPR001611 GO:0005515
Vian8g01611 597 Gene3D Ribonuclease Inhibitor 1 199 IPR032675 -
Vian8g01611 597 ProSiteProfiles Protein kinase domain profile. 276 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01611 597 SMART serkin_6 276 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01611 597 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 118 196 - -
Vian8g01611 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Vian8g01611 597 FunFam Kinase family with leucine-rich repeat domain-containing protein 258 354 - -
Vian8g01611 597 ProSitePatterns Protein kinases ATP-binding region signature. 282 305 IPR017441 GO:0005524
Vian8g01611 597 Pfam Leucine Rich Repeat 158 178 IPR001611 GO:0005515
Vian8g01611 597 Pfam Leucine Rich Repeat 113 133 IPR001611 GO:0005515
Vian8g01611 597 SUPERFAMILY Protein kinase-like (PK-like) 270 558 IPR011009 -
Vian8g01611 597 FunFam Kinase family with leucine-rich repeat domain-containing protein 355 572 - -
Vian8g01611 597 FunFam Leucine-rich repeat receptor protein kinase EMS1 38 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01611 Vian-Chr8 35635112 35637487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01611 1 580 Receptor kinase-like Gene Family AT5G25930 51.864 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian8g01611 Pkinase 8.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01611 - - gmx:100819744 925.62