Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01605 ATGGATGAAACTGAGACACAAAAGGAGACACAAAAGGTAGAGATGAGAAGAAAAGGGAGAGCTTCCATAGCCATCATTTTGAGATATGCTGATTGGATTGATGTTGTGCTCATGCTAATGGGTGCTTTGGGAGCAATTGGAGATGGCATGTCCACAAATATTTTGTTGCTGTTTGCAAGCCGTATCATGAACAGCCTAGGTTACAGTAATAACCAACAAAGTACTAAGACATACATGGCTGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTAGCAGTGATGGTGGTGGCCTTCATGGGTAATTCAAATTCAAACCTTCTTTTTCATATACTTGCTTTGCTTTTTGAGGACAAAGAAGGGTATTGCTGGAGCAAAACAAGTGAGAGACAGGTCCTAAGAATTCGTTACAAGTACTTGGAAGCTGTCCTAAGACAAGAAGTAGGGTTTTTCGATTCCCAAGAAGCAACTACTTCTGAAATCATTAACAGCATATCAAAAGACACTTCTCTCATCCAAGAAGTTCTGAGTGAAAAGGTGCCCCTATTTTTGATGCACTCATCATCATTCATATCTGGGGTTGCGTTTGCCACATATTTTTCTTGGAGGTTGGCCTTGGTAGCATTTCCAACGCTGCTTCTTCTCATCATCCCTGGCATGATTTATGGAAAGTATCTTATCTATTTGTCAAAGTCCTCTGTGAAAGAATACGGCAAAGCAAACAGCATTGTAGAACAGGCACTTAGCTCGGTGAAAACAGTGTATTCATTCACTGCAGAGAAGAGAATCACTGAGAGATATTCAGACATATTGTGTAGAACTTCAAGGCTTGGAATCAAGCAAGGAATAGCAAAGGGTCTTGCAGTAGGAAGCACAGGTCTCTCTTTTGCAATATGGGCATTCATTGCTTGGTATGGAAGCCGTTTGGTCATGTACAAAGGTGAAAGTGGTGGAAGGATCTATGCATCAGGCATTTCCTTCATAATGTGTGGACTATCTCTGGGAGTGGTGCTTCCTGATTTGAAGTACTTCACAGAAGCATCTGTTGCAGCATCAAGAATATTTGACATGATTGATCGAATACCATTAATTGATGGTGAAGACACAAAAGGGCTTGTGTTAGATCACATGAGTGGGAAGCTAGAGTTTGAGCATGTGAAATTCACATACCCTTCTCGTCCAGATATGGTTGTGCTGAGTGATTTCAATCTGCAAGTTGAAGCAGGGAAAGCGGTTGCTCTAGTTGGTGCAAGTGGAAGTGGGAAGTCCACAGCAATAGCATTGATGCAGAGATTTTATGATGCAGATGAAGGTGTTGTGAGGGTTGACGGTGTAGACATAAAAAGCCTTCAATTGAAATGGATAAGAGGGAAAATGGGGCTTGTGAGTCAAGAACATGCAATGTTTGGAACTTCCATAAAGGAGAATATCATGTTTGGGAAAACAGATGCTACCATGGATGAAATAGTAGCAGCAGCCTCAGCAGCCAATGCTCATAACTTCATAAGGCAGCTTCCTGAAGGTTATGAAACTAAGATTGGAGAAAGAGGAGCACTTCTTTCAGGAGGACAAAAGCAGCGATTAGCCATTGCAAGAGCCATCATAAAGAATCCTGTAATTCTCCTACTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCAGAATTACTGGTTCAGAATGCCCTCGATCAGGCCTCCATGGGAAGGACTACATTGGTTGTTGCACACAAGCTATCAACTATTCGAAATGCAGACCTGATAGCAGTTGTCAGTGGTGGTCGAATCATTGAAACCGGCACACACAATGAACTCATGAACAGACAAAATGGCCACTATGCAAACCTGGCAAAGTTACAGACACAATTGAGCATGGATGAGCAAGATCAAAATTCAGAACTAGGTGCTCTTTCAGCAGCAAGAAGCAGTGCAGGTAGACCAAGCACAGCAAGGTCGAGTCCTGCCATATTTCCAAAGTCACCATTGCCTGATGAAGCCAGCAACCCATCTCCAGTTTCTCACCCTCCACCATCTTTCACCAGACTTCTCTTTCTGAATGCTCCTGAATGGAAGCAAGGTCTAATTGGGACTCTCTCAGCCATAGCCTTTGGCTCCGTTCAACCACTCTATGCTTTAACCATAGGGGGTATGATTTCTGCCTTTTTTGCCAAAAGCCATCTGGAAATGATGCACAGAATCAGGACTTATTCTTTGATTTTCTGTTCCCTTTCCCTTGCCTCTATCACTCTCAATCTCTTGCAACACTACAATTTTGCTTATATGGGAGCCATGTTAACCAAAAGGATAAGACTGCGCATGCTGGAGAATATCTTAACCTTTGAAACTGCTTGGTTTGATGAGGAACAAAACTCCAGTGGAGCATTATGCTCAAGGTTAAGCTATGAGGCTTCCATGGTGAAGTCCCTTGTGGCAGACAGACTCTCTTTAATAGTCCAAACCACTTCTGCTGTCACCATTGCAATGATCATAGGGCTTGCCGTGGCTTGGAAGCTAGCTCTTGTTATGATAGCAGTGCAGCCACTCACAATTCTTTGCTTTTATACAAGAAAAGTGTTGCTCTCCACACTCTCAACAAAATTTGTTAAGGCACAGAATCAGAGTACACAGATTGCCGTGGAGGCAGTTTATAATCACAGAATTGTGACTTCTTTTGGGAGCATTACAAAAGTTCTACGGCTATTTGATGAGGCGCAAGAGGCTCCAAGGAAGGAGGCAAGGAAGAAGGCTTGGCTGGCTGGCATAGGAATGGGTTCTGCTCAGTGCCTGACGTTCATGTCATGGGCTTTGGATTTCTGGTATGGTGGTACTTTGGTGGAAAAGAGAGAAATATCAGCTGGGGATGTGTTCAAAACATTTTTTGTGTTGGTGAGCACTGGCAAGGTCATAGCTGATGCTGGAAGCATGACTTCTGACCTTGCCAAGAGTTCAACAGCAGTGGCATCTGTGTTTGAAATTCTTGACCGAAAATCACTAATTCCCAAGGCTGGGGATAACACTAGTGGCATTAAGTTGGAAAAGATGAGTGGTAAGATAGAGTTAAAGAATGTAGATTTTGCCTATCCAAGCAGGGCAGGGACACCAATTTTGCGCAAGTTTTGCTTGGAGGTGAAGCCAGGAAAAAGTGTTGGGCTTGTCGGAAAAAGTGGATGTGGAAAATCAACAGTGATAGGCTTGATCCAAAGATTCTATGATGTTGAGAGAGGTTCAGTTAAAGTGGATAACGTAGACATAAGAGAATTAGACATTCACTGGTACAGACAGCACACAGCACTAGTGAGCCAAGAACCTGTCATATATTCCGGCAGCATACGTGAGAACATTTTGTTTGGGAAGCAAGATGCAACTGAGAATGAAGTAGTTGAAGCTGCAAGAGCTGCAAATGCTCATGAGTTCATATCATCACTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGAGTGCAGCTATCAGGAGGGCAAAAGCAGAGAATAGCAATTGCAAGAGCCATAATTAGGAACCCAAAGATACTACTTTTGGATGAGGCAACAAGTGCATTGGATGTGCAATCAGAACAAGTTGTGCAGGAAGCACTTGATAGGACTATGGTAGGAAGAACCACCATTGTTGTGGCACATAGGCTTAACACTATCAAAGAGCTTGATTCGATTGCTTATGTGTGTGAGGGCAAGGTCCTCGAGCAAGGAACCTATGCTCAACTTAGGCACAAGAGAGGTGCCTTCTTCAACCTTGCCAGCCATCAAATCCAAACTTAG 3780 0.4304 MDETETQKETQKVEMRRKGRASIAIILRYADWIDVVLMLMGALGAIGDGMSTNILLLFASRIMNSLGYSNNQQSTKTYMAEVEKCSLYFVYLGLAVMVVAFMGNSNSNLLFHILALLFEDKEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQEATTSEIINSISKDTSLIQEVLSEKVPLFLMHSSSFISGVAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSSVKEYGKANSIVEQALSSVKTVYSFTAEKRITERYSDILCRTSRLGIKQGIAKGLAVGSTGLSFAIWAFIAWYGSRLVMYKGESGGRIYASGISFIMCGLSLGVVLPDLKYFTEASVAASRIFDMIDRIPLIDGEDTKGLVLDHMSGKLEFEHVKFTYPSRPDMVVLSDFNLQVEAGKAVALVGASGSGKSTAIALMQRFYDADEGVVRVDGVDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKTDATMDEIVAAASAANAHNFIRQLPEGYETKIGERGALLSGGQKQRLAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSGGRIIETGTHNELMNRQNGHYANLAKLQTQLSMDEQDQNSELGALSAARSSAGRPSTARSSPAIFPKSPLPDEASNPSPVSHPPPSFTRLLFLNAPEWKQGLIGTLSAIAFGSVQPLYALTIGGMISAFFAKSHLEMMHRIRTYSLIFCSLSLASITLNLLQHYNFAYMGAMLTKRIRLRMLENILTFETAWFDEEQNSSGALCSRLSYEASMVKSLVADRLSLIVQTTSAVTIAMIIGLAVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRKEARKKAWLAGIGMGSAQCLTFMSWALDFWYGGTLVEKREISAGDVFKTFFVLVSTGKVIADAGSMTSDLAKSSTAVASVFEILDRKSLIPKAGDNTSGIKLEKMSGKIELKNVDFAYPSRAGTPILRKFCLEVKPGKSVGLVGKSGCGKSTVIGLIQRFYDVERGSVKVDNVDIRELDIHWYRQHTALVSQEPVIYSGSIRENILFGKQDATENEVVEAARAANAHEFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPKILLLDEATSALDVQSEQVVQEALDRTMVGRTTIVVAHRLNTIKELDSIAYVCEGKVLEQGTYAQLRHKRGAFFNLASHQIQT 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01605 1259 Gene3D - 1009 1259 IPR027417 -
Vian8g01605 1259 SUPERFAMILY ABC transporter transmembrane region 682 996 IPR036640 GO:0005524|GO:0016020
Vian8g01605 1259 ProSitePatterns ABC transporters family signature. 522 536 IPR017871 GO:0005524|GO:0016887
Vian8g01605 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 621 IPR027417 -
Vian8g01605 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 695 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g01605 1259 FunFam Putative ABC transporter B family member 8 663 1004 - -
Vian8g01605 1259 Gene3D ABC transporter type 1, transmembrane domain 26 925 IPR036640 GO:0005524|GO:0016020
Vian8g01605 1259 FunFam ABC multidrug transporter SitT 1009 1257 - -
Vian8g01605 1259 Gene3D - 373 622 IPR027417 -
Vian8g01605 1259 FunFam ABC transporter B family member 4 373 630 - -
Vian8g01605 1259 CDD ABC_MTABC3_MDL1_MDL2 1019 1256 - -
Vian8g01605 1259 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 1000 - -
Vian8g01605 1259 CDD ABC_MTABC3_MDL1_MDL2 384 621 - -
Vian8g01605 1259 Pfam ABC transporter 1040 1186 IPR003439 GO:0005524
Vian8g01605 1259 SMART AAA_5 410 602 IPR003593 GO:0016887
Vian8g01605 1259 SMART AAA_5 1046 1238 IPR003593 GO:0016887
Vian8g01605 1259 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 356 - -
Vian8g01605 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1256 IPR027417 -
Vian8g01605 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1019 1255 IPR003439 GO:0005524
Vian8g01605 1259 Pfam ABC transporter 401 550 IPR003439 GO:0005524
Vian8g01605 1259 ProSitePatterns ABC transporters family signature. 1158 1172 IPR017871 GO:0005524|GO:0016887
Vian8g01605 1259 Pfam ABC transporter transmembrane region 114 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g01605 1259 Pfam ABC transporter transmembrane region 696 965 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g01605 1259 FunFam ABC transporter B family member 1 25 382 - -
Vian8g01605 1259 MobiDBLite consensus disorder prediction 625 675 - -
Vian8g01605 1259 PANTHER ABC TRANSPORTER B FAMILY 4 707 IPR039421 -
Vian8g01605 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 124 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g01605 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 619 IPR003439 GO:0005524
Vian8g01605 1259 MobiDBLite consensus disorder prediction 625 656 - -
Vian8g01605 1259 SUPERFAMILY ABC transporter transmembrane region 26 367 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01605 Vian-Chr8 35564663 35572515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01605 8 1249 Calmodulin-binding Proteins AT2G36910 41.882 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01605 K05658 - gmx:100801088 2193.7