Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01601 ATGGAGAGCATTTTGAAGCCCCTGAGAGATGGTGAGTCAGTGCTTGATCTGAGTCCAAGATCAACCGTGAGTGGTGGTGTTGCAGATGTCTACGGTGAGGATCATGCCACTGAGGACCAACTTGTCACCCCATGGACTTTCTCAGTTGCCAGTGGGTATTCTTTGCTTAGAGATCCACAGTACAACAAGGGGCTTGCTTTCACTGAGAAAGAGAGAGATGCACACTATTTGCGTGGACTATTACCTCCTACAATTACCTCCCAGAAACTTCAGGAGAAACAGTTGATAAACAATATCCGACAGTATCAGGTGCCATTGCAGAAGTACATAGCTATGATGGAACTTCAGGAGACAAATGAAAGGCTGTTTTACAAACTTCTAGTTGACAATGTTGAGGAACTGCTCCCAATTGTGTATACTCCTGTTGTTGGTGAGGCCTGCCAGAAATATGGGAGCATCTTCAAGCGTCCTCAGGGTCTTTTCATAAGTTTGAAAGAGAAGGGAAAGATCCTTGAGGTGTTGAAAAACTGGCCTGAAAAGAGTATCCAAGTTATTGTTGTAACAGATGGTGAACGAATTTTGGGACTTGGAGATCTTGGATGTCAGGGGATGGGAATTCCTGTTGGTAAATTGGCCTTGTACACAGCACTAGGAGGAGTTCGTCCATCAGCATGTTTGCCTATTACGATTGATGTTGGAACAAACAACGAGAAATTACTGAATGATGAGTTTTACATTGGGCTTAGACAAAAGAGGGCAACAGGGCAGGAATATTCCGAACTTCTGCAAGAGTTCATGACTGCTGTCAAGCAAAACTACGGAGAAAAAGTTCTTATACAGTTTGAAGATTTTGCGAACCACAACGCTTTTGAGTTGCTTGCAAAATATGGTACAACTCATCTTGTTTTCAACGATGATATTCAGGGAACTGCATCTGTGGTACTTGCTGGGGTTGTGGCAGCCTTGAAGCTCATTGGTGGTACTCTGGCTGACCACACATTCTTGTTCCTTGGTGCTGGAGAGGCAGGGACAGGAATAGCAGAACTTATAGCTCTCGAGACATCAAAGCAGACAAAGACACCTATAGAGGAGACTCGCAAGAAGATATGGCTTGTGGATTCAAAGGGTTTGATTGTTGGTTCAAGAAAGCATTCACTTCAACATTTCAAGAAGCCATGGGCTCATGAACATGAGCCTGTTGACACTCTCTTAGAAGCTGTTAAGGTAATCAAACCTACAGTTTTGGTTGGATCATCAGGAGTGGGAAAAACATTTACAAAGGAAGTAATTGAAGCTGTGTCTTCCATCAATGAAAAACCTCTTATTTTGGCTCTCTCCAATCCAACATCACAATCTGAGTGTACAGCTGAAGAGGCTTACCAATGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGAAGTCCATTTGATCCTATAGAATACAAGGGAAAAGTGTACTATTCAGGCCAGGCCAACAATGCTTACATTTTCCCTGGTTTTGGTTTGGGATTGGTAATCTCTGGAGCAATCCGAGTTCATGATGATATGCTTCTGGCAGCATCGGAAGCCTTGGCTAAACTAGTGACTGAGGAGAACTATGAAAAGGGCTTGATTTATCCACCATTCTCTGACATCAGAACAATTTCAGCTAACATAGCTGCAGGTGTTGCTGCCAAGGCATATGAGCTGGGCTTGGCTACACGTCTCCCTCGTCCTGAGAATCTTGTGAAGTATGCCCAGAGTTGCATGTATTCTCCTGTGTACCGAAACTATAGGTGA 1776 0.4381 MESILKPLRDGESVLDLSPRSTVSGGVADVYGEDHATEDQLVTPWTFSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTITSQKLQEKQLINNIRQYQVPLQKYIAMMELQETNERLFYKLLVDNVEELLPIVYTPVVGEACQKYGSIFKRPQGLFISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDEFYIGLRQKRATGQEYSELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLADHTFLFLGAGEAGTGIAELIALETSKQTKTPIEETRKKIWLVDSKGLIVGSRKHSLQHFKKPWAHEHEPVDTLLEAVKVIKPTVLVGSSGVGKTFTKEVIEAVSSINEKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPIEYKGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKLVTEENYEKGLIYPPFSDIRTISANIAAGVAAKAYELGLATRLPRPENLVKYAQSCMYSPVYRNYR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01601 591 ProSitePatterns Malic enzymes signature. 303 319 IPR015884 GO:0004471
Vian8g01601 591 PRINTS Malic enzyme signature 278 296 IPR001891 GO:0004470|GO:0004471
Vian8g01601 591 PRINTS Malic enzyme signature 182 211 IPR001891 GO:0004470|GO:0004471
Vian8g01601 591 PRINTS Malic enzyme signature 334 350 IPR001891 GO:0004470|GO:0004471
Vian8g01601 591 PRINTS Malic enzyme signature 303 319 IPR001891 GO:0004470|GO:0004471
Vian8g01601 591 PRINTS Malic enzyme signature 218 240 IPR001891 GO:0004470|GO:0004471
Vian8g01601 591 PRINTS Malic enzyme signature 437 453 IPR001891 GO:0004470|GO:0004471
Vian8g01601 591 PRINTS Malic enzyme signature 122 146 IPR001891 GO:0004470|GO:0004471
Vian8g01601 591 Pfam Malic enzyme, NAD binding domain 307 559 IPR012302 GO:0051287
Vian8g01601 591 Gene3D - 50 304 IPR037062 GO:0004471
Vian8g01601 591 SMART Malic_M_2 307 560 IPR012302 GO:0051287
Vian8g01601 591 FunFam Malic enzyme 50 304 - -
Vian8g01601 591 SMART malic_2 116 297 IPR012301 GO:0004471
Vian8g01601 591 PANTHER MALIC ENZYME-RELATED 19 590 - -
Vian8g01601 591 CDD NAD_bind_1_malic_enz 307 585 - -
Vian8g01601 591 PIRSF ME 26 591 IPR001891 GO:0004470|GO:0004471
Vian8g01601 591 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 307 590 IPR036291 -
Vian8g01601 591 Gene3D - 305 591 - -
Vian8g01601 591 Pfam Malic enzyme, N-terminal domain 116 296 IPR012301 GO:0004471
Vian8g01601 591 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 27 306 IPR046346 -
Vian8g01601 591 FunFam Malic enzyme 305 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01601 Vian-Chr8 35536141 35540945 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04015 1 63227338 63231900 Vian8g01601 8 35536141 35540945 PCT