Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01591 ATGGTCGACCCGGCACCATCCTCAGAATCAGAGACCAGAAACGCCGTCAGTTCTGCTTCTTCGCCGTCATCGTCGTCGTCGAGTTCTAAGAAACGAGGAAGAACCAACGACAGCAATGGTAGTAGTAGTAACGACAGAAAGCATTCGGTGTACAGAGGAGTCAGAATGCGGACGTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGAAAAAAGAACCGAATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTTACCATAAAGGGCTCCTCGGCCATCCTTAACTTCCCCGAACTCGCCGCCTCGCTGCCGCGCCCCGCCTCCAACTCCCCCCGCGACGTGCAGGCTGCGGCGGCCAAGGCCGCCTCCATGGAGGCGCCGCCTCCTCGGACCCCTCCCTCCCCCGCCGCAGCGCCGGAGGACGACCTCGGCGAGATTGTGGAGCTGCCGCCTCTGGGGTCCATCTTCGACTCGCCCGACCCGAATACGGAGTTCGTGTTCGTCGACCCGGATGAAGGGTGGCCCTATCCTCAACCGTGGTGTCACGGCATTTATGACGGTGGGTACTTCATCGGCGACATGAACATGGTTTCAATGCAAGAGTCAGAAAGCATGGTTCTTTCCTTATGGCCTTGA 666 0.6096 MVDPAPSSESETRNAVSSASSPSSSSSSSKKRGRTNDSNGSSSNDRKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNSPRDVQAAAAKAASMEAPPPRTPPSPAAAPEDDLGEIVELPPLGSIFDSPDPNTEFVFVDPDEGWPYPQPWCHGIYDGGYFIGDMNMVSMQESESMVLSLWP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01591 221 MobiDBLite consensus disorder prediction 114 149 - -
Vian8g01591 221 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
Vian8g01591 221 CDD AP2 49 109 IPR001471 GO:0003700|GO:0006355
Vian8g01591 221 MobiDBLite consensus disorder prediction 1 49 - -
Vian8g01591 221 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Vian8g01591 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 162 - -
Vian8g01591 221 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Vian8g01591 221 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vian8g01591 221 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Vian8g01591 221 MobiDBLite consensus disorder prediction 7 47 - -
Vian8g01591 221 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Vian8g01591 221 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Vian8g01591 221 FunFam Ethylene-responsive transcription factor 2 49 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01591 Vian-Chr8 35422518 35423183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01591 5 190 AP2-EREBP Transcription Factor Family AT5G11590 51.442 3.00e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian8g01591 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01591 K09286 - gmx:100804801 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01591 8 35422518 35423183 Vian8g01591 8 35422518 35423183 ECH
Vian1g04021 1 63280777 63281484 Vian8g01591 8 35422518 35423183 PCT