Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01589 ATGGCAGAGGGTTCATCAAATGATGCAGGGAAGGGAAAAAACATCGTTGAAGACAAAGATTATGAGAGAGAGTTTCAGTACAAGGATGAGATGCAGTTGGAGTTCGTGTTCAATGTTGGCCATGTTAAAGACTTCGAGTTGAGCATGCCATATAGGGCACAATTGACCAACGACAAGTGGAATCTTTTTCTACGTGGGCCCTACTTCGAAGATATCCTCCTACAGTTCCTCAAAGAGGAAGAAGATGTGAAAGAGGGACTCCCAGTGACAGTGTATGACAAAGGGGGACATGAGTTCCCAATGATGCTGAAAAAATTTGACAAAGATTCCATCACTTACTATGTGCTCAATCGAGGGTGGTTCAACTTTTGCGACCAAAAACGATTGCAGGAAAACGATGTTGTTGCACTGCGAACTTTTCGACATGCAATAACTGACGAGTTATCCTTTGTTGTTACTTTTACAAAAATGAGGTGA 477 0.4214 MAEGSSNDAGKGKNIVEDKDYEREFQYKDEMQLEFVFNVGHVKDFELSMPYRAQLTNDKWNLFLRGPYFEDILLQFLKEEEDVKEGLPVTVYDKGGHEFPMMLKKFDKDSITYYVLNRGWFNFCDQKRLQENDVVALRTFRHAITDELSFVVTFTKMR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01589 158 Gene3D - 13 158 IPR015300 -
Vian8g01589 158 CDD B3_DNA 75 156 IPR003340 GO:0003677
Vian8g01589 158 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 74 154 IPR005508 GO:0003677
Vian8g01589 158 Pfam B3 DNA binding domain 74 139 IPR003340 GO:0003677
Vian8g01589 158 ProSiteProfiles B3 DNA-binding domain profile. 89 158 IPR003340 GO:0003677
Vian8g01589 158 SUPERFAMILY DNA-binding pseudobarrel domain 80 148 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01589 24 156 B3 DNA Binding Superfamily AT4G03170 28.058 3.63e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian8g01589 B3 7.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01589 - K07486 pvu:PHAVU_004G169500g 272.322