Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01538 ATGATGGAACACAACATCATCAGCAACACCAACAACGTGATCGCACCGTTTGTCATAAAAACCTACAACATGGTTAACGATCCCGCCACCGATAATCTCATCACGTGGGGCCCAGCCAACAACAGTTTCATCGTCCTCGACCCTCTCGACTTCTCTCACTCACTCCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTACGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGCGGGCAGAAGCATTTGTTGAGGAACATCGTGCGGCGGAAGCATGGCGGAGGTAGGAGCAGTAATTTGCATTTGCATACCCTGAAGCTGGAAGAGTTGGACGACGGGGTCATGGTGATGGAGATAGCGAAGCTGAAGGAGGAGCAGAAGGCGTTGGAGGAAGAGCTTCAAGGAATGAACAAGAGGTTAGAGACAACGGAAAAACGACCGCAGCAAATGATGGCGTTTCTGTCAAAGGTTGTCGAGGACCCGCAGGTTCTCTCTCGGATTCTCCGAGAAAGAGAAAGAAAACACCTCAGCGAGAAAAAGCGACGCCAAATTCCTCCGCCTTCGACGGCGGTGACCTCCTCCTCCTCCTCATCCGGCATCAAGACGGAGTTCGAAGAGGACGAGGGTAACAACATCATGTCTTCATCGCCGGAGACAGGTTTGGAAATCGATAATAATAATAATATTTTATATTCGTCGGCGACGGCGGGGTATTGGGGGGAACAGGGATGTTATGGGTATAATTGCGGCGGAGTAACGACGCCGTTAACGGTGGTGACACCGGCGGCGCCGGCGATGGGAGGAGGGTATTTGGGGCGTGGGAGTTATTTTGGGGAAATGGCGGCGGAGGGGAGTGCTCTGCCGCCTTATCCGTTTTCGTTGTTGGAAGGTGGGTTTTAG 948 0.5253 MMEHNIISNTNNVIAPFVIKTYNMVNDPATDNLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRSSNLHLHTLKLEELDDGVMVMEIAKLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILRERERKHLSEKKRRQIPPPSTAVTSSSSSSGIKTEFEEDEGNNIMSSSPETGLEIDNNNNILYSSATAGYWGEQGCYGYNCGGVTTPLTVVTPAAPAMGGGYLGRGSYFGEMAAEGSALPPYPFSLLEGGF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01538 315 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01538 315 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01538 315 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01538 315 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01538 315 MobiDBLite consensus disorder prediction 202 216 - -
Vian8g01538 315 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 226 IPR027725 -
Vian8g01538 315 MobiDBLite consensus disorder prediction 187 237 - -
Vian8g01538 315 Gene3D - 9 107 IPR036388 -
Vian8g01538 315 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01538 315 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian8g01538 315 FunFam Heat shock transcription factor 1 10 107 - -
Vian8g01538 315 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Vian8g01538 315 Coils Coil 135 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01538 Vian-Chr8 34895098 34896481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01538 13 315 HSF AT3G24520 47.917 3.31e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian8g01538 HSF_DNA-bind 4.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01538 K09419 - gmx:100794896 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01538 8 34895098 34896481 Vian8g01538 8 34895098 34896481 ECH