Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01517 ATGGATCTAGAAGACAAGTTCCTTGCTAAAGTTTCTGGTATTCAAAGTCTTTCATCTAGTGCTCAAAGTACTCCTGAAAAAAATGGTCATTCGGATGATGCTTCAAGAAGTTCAGAACTTCTTCAGGAGTTCCTAAAACCTGCTCTTAAGAAGGAACTTCTACGAACTTGCGTTGATAAGGACAAAAAGAACATTTCTTCAAAAAGCAGGATGACTGAAACTAAGTCAACCAGTAAGATTGTCAAGAAGCAGGACTCAAAAAAAGTTTCTGGTGTCAGCAATCAGTCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCTGTGCGGTTTGTACCAGTTCCTGACCCACCTAGTGATTTTGGACATTCAAACTCCTGGATCTGTAAGAATTCTGCTTGTCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCCAGCCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGTGGATTGTCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAACTTGGAGTTGTTGATCATGGACAACTGATGCAATTAGATGGTGGTTATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAGCATAGCAAAAGATGCTCGACGAGTAGATGTACTATGTTTCAGGATATATTTGAGCTACAGGCTTTTGGATGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAAGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAAATGGCACGTGGGATTGTCAGCAGACTCCCTATTGCTAGTGATGTCCAAAAACTCTGCTCTCTTGCTATTGAGAAAGCTGACGAGTGGTTGGCCACTGTTCCCAATGTAAATCCAGAATCCAGAGAGGGTTCACTTCCTGCTGCCTGCAAGGTTGTGTTTGAAGAGGTGACGTCTTCCTCAGTCAAAATAATTTTAATTGAAATGTCAAATGCATCTTCTGGGGACGTTAAGGGATACAAGCTATGGTATTACAAGAGCAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTTTTTCCCAAATCTCAGAGAAGGATTTTGTTATCCAACCTCCAACCTTGCACGGAATATACATTTCGGATTGTATCTTTTACTGATACAGGTGACCTGGGTCACTCTGAGACCAAGTGTTTCACCAAGAGCGTTGAGATATTGGAAAAGAATTCATCTTCATCAGTGGCCGTGAATCAAAAAAAGAACCTTCAAGCTGAGTGCAATTCTTCTGGTTCCAAATTGGAGCCCAATCCCACATCAGCTGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATCTTGCATCTTACTTGGGCTCAAGAACAAGGTAGCTTTGAGGGGTTTTGCTGTGCTGACAAGAGAAACTGCTGTGGGCAGAGTGAAACTATCAAGCCTAGCAAACCACAAGAGCAGTTGCCTTCAGTTTCACGTGACCTCGATCTAAATGTAGTTTCAGTGCCTGATTTAAACGAAGAGCTGACACCTCCGTTTGAGTCTTCCAGGGATGAAGATAACGGTTGTACCTTGCAGCAGGCTGTTGAGGCTGATGATGATGCTGCTTCTCATGATTTAGACAAAAATTTAGCAAGATCACATGGTAGTGGTGGTTCACAAACATGGAACCATGGACAAACCGGAGAAGTTCCTGCTGTTGACTCACGTGGAGACGCAAGTAGGAAAAGGAAAGCTAGCACAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGCTCTCCTTTACGCCCTTCTGATGGTCCATTCTCTTTGGATGAAAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGCCAGGGTCATATCAAGCAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGAAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCTAGTAGTTTGGCAGGGCAGCTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGCAACAAGACCGTGACATCAAATTAA 2157 0.4223 MDLEDKFLAKVSGIQSLSSSAQSTPEKNGHSDDASRSSELLQEFLKPALKKELLRTCVDKDKKNISSKSRMTETKSTSKIVKKQDSKKVSGVSNQSSRKQHRKGENPVRFVPVPDPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKLGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCFRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLATVPNVNPESREGSLPAACKVVFEEVTSSSVKIILIEMSNASSGDVKGYKLWYYKSREESHTKDPVCVFPKSQRRILLSNLQPCTEYTFRIVSFTDTGDLGHSETKCFTKSVEILEKNSSSSVAVNQKKNLQAECNSSGSKLEPNPTSADSGFKVRDLGKILHLTWAQEQGSFEGFCCADKRNCCGQSETIKPSKPQEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLDKNLARSHGSGGSQTWNHGQTGEVPAVDSRGDASRKRKASTNEETHDCDSTLINGSPLRPSDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKTVTSN 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01517 718 MobiDBLite consensus disorder prediction 65 86 - -
Vian8g01517 718 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Vian8g01517 718 Gene3D Immunoglobulins 314 425 IPR013783 -
Vian8g01517 718 MobiDBLite consensus disorder prediction 13 39 - -
Vian8g01517 718 CDD FN3 332 421 IPR003961 GO:0005515
Vian8g01517 718 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 713 IPR044514 GO:0010048|GO:0040029
Vian8g01517 718 MobiDBLite consensus disorder prediction 65 110 - -
Vian8g01517 718 SUPERFAMILY Fibronectin type III 331 412 IPR036116 GO:0005515
Vian8g01517 718 Pfam Fibronectin type III domain 332 413 IPR003961 GO:0005515
Vian8g01517 718 MobiDBLite consensus disorder prediction 566 624 - -
Vian8g01517 718 ProSiteProfiles Fibronectin type-III domain profile. 329 426 IPR003961 GO:0005515
Vian8g01517 718 MobiDBLite consensus disorder prediction 13 28 - -
Vian8g01517 718 MobiDBLite consensus disorder prediction 593 609 - -
Vian8g01517 718 MobiDBLite consensus disorder prediction 571 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01517 Vian-Chr8 34663618 34670850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01517 124 709 PHD Gene Family AT3G24440 49.668 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01517 - - gmx:100780157 1356.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01517 8 34663618 34670850 Vian8g01517 8 34663618 34670850 ECH
Vian1g04066 1 63723135 63730169 Vian8g01517 8 34663618 34670850 PCT