Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01485 ATGAAAGAAGCAAGTGCATTAGGAGCTAGAACTGCTCGAGCATGCGAGAGCTGTCTAAAAGTAAGAGCACGGTGGTTTTGTGCTGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCGGCAAACCAATTAGCACGCAGGCACGAAAGGGTTAAGCTTCAAACTGCATCCTCTAAGGTCAACTACTCAGTGACCCTTAATCAGAACAATAATGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACACCGCGCCACAACAGCAAGCACGTAACGGTGCAGCTACAAGAACAACAGAAGAAAATAGTACACGAAGAAGTGTTTTTCAACAACACCATTAGTCTTCCCCTTGTGCCAGAGCTTGGAAGTGAAGAAGCACTGCATAATTATGAGAGTGAGGAGCAGCTATTGTGTCGCGTGCCCGTGTTTGATGCTGAGCTTTGTAGTGTATACAATGAAGTGAAGGAAGAGGTTTTAGCTGGTGAAGAAGTCTTTGACTTAGACAATTTTTCTTCCGAGCTTCTGCCATCAGATATGGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTACTTGGAAACGGAGCTGACGAGGATTCATCTGAGCACGTGAAAGGATCAGAACTGCTGCTTGATTGCAAAGAAGAAGATGAAGAAATGGATGCATGTGTTGATGCAGTTGGAGCCAAAGAAACAATGGTGAAGGTCAAAGATGAAGAAGAACTTGATTCTGATACACCTTGCCATTTGGATTCGATTATTCTTGACATGAACAGCGAGGCCTTTAATTGGAATGATATTGTTGAGTCAGAATCACTTGCTCAGGAACAGGAAGAGGAGGCAAGTACAGTGGGAGCCGACAAGAAGGACATGTTTTTGAGGCTAAACTATGAAGATGTTATTAGTGCTTGGGCCAGTCAAGGTTGTTCTCCATGGACAACAGGAACCCCACCAAACTTCAACTCAGATGATTGCTGGCCAGATTTCTTGGGTTCGAATGGAGGGGATGTTCAGTGCTGTTATGGGGAAATGAAAAGTTTAAGAGGGCATGCAGATGGTGGAAGAGAAGCAAGAGTGTCAAGATACCGAGAGAAGAGAAGAACTCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAATTGAATGCTGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGAACATCCATTGCTTTGCCAGCATAG 1230 0.4415 MKEASALGARTARACESCLKVRARWFCAADDAFLCHGCDNMVHSANQLARRHERVKLQTASSKVNYSVTLNQNNNVAWHSGFTRKARTPRHNSKHVTVQLQEQQKKIVHEEVFFNNTISLPLVPELGSEEALHNYESEEQLLCRVPVFDAELCSVYNEVKEEVLAGEEVFDLDNFSSELLPSDMDLAEFAADVESLLGNGADEDSSEHVKGSELLLDCKEEDEEMDACVDAVGAKETMVKVKDEEELDSDTPCHLDSIILDMNSEAFNWNDIVESESLAQEQEEEASTVGADKKDMFLRLNYEDVISAWASQGCSPWTTGTPPNFNSDDCWPDFLGSNGGDVQCCYGEMKSLRGHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSIALPA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01485 409 SMART bboxneu5 10 57 IPR000315 GO:0008270
Vian8g01485 409 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Vian8g01485 409 Pfam B-box zinc finger 12 57 IPR000315 GO:0008270
Vian8g01485 409 CDD Bbox1_BBX-like 14 55 - -
Vian8g01485 409 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 404 - -
Vian8g01485 409 Pfam CCT motif 360 402 IPR010402 GO:0005515
Vian8g01485 409 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01485 Vian-Chr8 34305099 34307391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01485 4 402 C2C2-CO-like Transcription Factor Family AT1G25440 44.651 3.23e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian8g01485 zf-B_box 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01485 - - gmx:100802113 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04082 1 63900521 63901891 Vian8g01485 8 34305099 34307391 PCT