Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01479 ATGCTTCTGGTTGAAGGAAGCTGCTATACTGCTGCTGCTGCTGCTGGTGGTTTGATCAATCTGATGGAGGAAAATCTGCCTCCTGGATTCAGGTTCCATCCTACAGACGAAGAACTCATCACATGTTATCTTACAAAGAAGGTTTCTGATTCTAGCTTCACATCCAAAGCTATAGCAGTCGTTGATCTCAACAAATCTGAACCATGGGACCTACCAGGTAAGGCTTCAATGGGTGAAAAAGAGTGGTACTTCTTTAGCTTAAGAGACAGAAAGTATCCAACTGGACTTCGGACAAACCGAGCGACTGAATCAGGTTACTGGAAAACAACAGGAAAAGACAAGGAAATTTATCGTACTGGTGTTTTGGTCGGAATGAAGAAAACCCTAGTCTTCTATAGAGGTAGAGCTCCAAGGGGAGAGAAAAGTAATTGGGTCATGCACGAATATAGACTCGAAAACAAGCATCACTTGAGACCTTCCAAGGATGAATGGGTGGTTTGCAGGGTTTTCCAGAAGAGCTTACTGGTGAAGAAACCACAGCAAACAAACTCATCACAACCAGATTCTCCATGTGACACAGTCTCAGTGGTCAATGAATTTGGTGATGTTGAGCTTCCTAATCTAAATAGCATTGCAAATTCTTCAGGTGGACTCACTGACAATATTTCAGGACACAGTTTCATGAATGCTGATATGAGTAATAGTGTTAACACAAGCATGAACTTGGCAATGAATTGGGCAGTTGCAAATGATGTTCATCAGGTCCCCTCTCTTCCATCACTACCATGGCCTTCTGGGTTGCTAAGTCCAAGCATTTCTTCTGTAAATTCTTTGCTTCTCAAGGCATTGCAACTTAGAAGTTATCAACAAAGAGAAGCAGCAGCAGCAGCAGCAGCTACAGATCAATTTGCATCATTTATGGGTCAAGGAGTTTCCCAAGTTGGAACTGACCTAAGTTCAAATCTGACAGCATCTTCTTCAAAAGTTCAAGAATGTATGCCACAGCAGCAGCAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 1050 0.4257 MLLVEGSCYTAAAAAGGLINLMEENLPPGFRFHPTDEELITCYLTKKVSDSSFTSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIYRTGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHHLRPSKDEWVVCRVFQKSLLVKKPQQTNSSQPDSPCDTVSVVNEFGDVELPNLNSIANSSGGLTDNISGHSFMNADMSNSVNTSMNLAMNWAVANDVHQVPSLPSLPWPSGLLSPSISSVNSLLLKALQLRSYQQREAAAAAAATDQFASFMGQGVSQVGTDLSSNLTASSSKVQECMPQQQQQEQPFNLDSIW 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01479 349 ProSiteProfiles NAC domain profile. 26 172 IPR003441 GO:0003677|GO:0006355
Vian8g01479 349 FunFam NAC domain-containing protein 100-like 35 175 - -
Vian8g01479 349 SUPERFAMILY NAC domain 21 172 IPR036093 GO:0003677|GO:0006355
Vian8g01479 349 Gene3D NAC domain 35 175 IPR036093 GO:0003677|GO:0006355
Vian8g01479 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 271 - -
Vian8g01479 349 Pfam No apical meristem (NAM) protein 27 151 IPR003441 GO:0003677|GO:0006355
Vian8g01479 349 MobiDBLite consensus disorder prediction 325 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01479 Vian-Chr8 34250261 34252061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01479 22 349 NAC Transcription Factor Family AT3G18400 56.119 6.56e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian8g01479 NAM 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01479 - - pvu:PHAVU_004G156700g 531.176