Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01472 ATGTCTGCTTCTTCAAAGAGCATCATCTGTTACAGTGAAGAAGATACTGAACTTAGAAGAGGGCCATGGAGTATTGAAGAGGATGATCTTCTTGGGAATTACATTGCCAATCATGGAGAAGGGAGATGGAATTTGCTTGCTATACGTGCAGGCTTAAGGAGAACAGGAAAGAGTTGCAGATTAAGGTGGCTAAATTATCTAAAGCCAGATGTTAAACGAGGCAATTTAACCTCAGAGGAGCAGCTTTTGATTTTTGAACTCCACTCAAGGTGGTCAAAAATTGCACAACAGCTGCCAGGCAGAACAGACAATGAAATAAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCAAGATATATGAAATCTGAGACACAGAGAACAACAGGATTTGTAGAATTTTTCAAGGCTCTACAGATGACAAGATGTCTTCATAAAGCACAAGAATCATCTCCTTCAGCCATGTCACTCCAAGACCAAGAAATTCATATGCCTTCTAATGGTGGTTTTCATTATTCATCATTTGGGATTGAGGCAACACCAGAAACACAAATCACTAGCCAGCGAGGTGTCAACCATTTGAATCAGCATGAGCAGAACTCAGACTCTGAGCACAACAATGGTTCAAGCATTTCCAATTCAGAATCAGTAAATATCCAATATATGACTCAGCCTTTGGGGTGCACTACAAATCAATTCCAGGCCTTAGACAACTATGACTTTGGCATCTGTTCATATGATGGCTACAACATAGACAACAGTGCCTATGACATGGATTCATTCAACCTGGCAGCCACAGTGGATGCTCAGAATCTGGAACTACCAGTGATTGGTTGCCAAATATCAGAAACCAACTCGCTAAATATGGAATCTGAATGTAGCACAAGGAGCAATGATGAATTATGGCAATTTATGAACATATAA 924 0.4004 MSASSKSIICYSEEDTELRRGPWSIEEDDLLGNYIANHGEGRWNLLAIRAGLRRTGKSCRLRWLNYLKPDVKRGNLTSEEQLLIFELHSRWSKIAQQLPGRTDNEIKNYWRTRIQKQARYMKSETQRTTGFVEFFKALQMTRCLHKAQESSPSAMSLQDQEIHMPSNGGFHYSSFGIEATPETQITSQRGVNHLNQHEQNSDSEHNNGSSISNSESVNIQYMTQPLGCTTNQFQALDNYDFGICSYDGYNIDNSAYDMDSFNLAATVDAQNLELPVIGCQISETNSLNMESECSTRSNDELWQFMNI 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01472 307 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Vian8g01472 307 SMART sant 19 69 IPR001005 -
Vian8g01472 307 SMART sant 72 116 IPR001005 -
Vian8g01472 307 Pfam Myb-like DNA-binding domain 73 112 IPR001005 -
Vian8g01472 307 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Vian8g01472 307 FunFam Myb transcription factor 20 72 - -
Vian8g01472 307 ProSiteProfiles Myb-like domain profile. 68 114 IPR001005 -
Vian8g01472 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Vian8g01472 307 SUPERFAMILY Homeodomain-like 18 110 IPR009057 -
Vian8g01472 307 Gene3D - 75 131 - -
Vian8g01472 307 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 213 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vian8g01472 307 CDD SANT 22 67 IPR001005 -
Vian8g01472 307 Gene3D - 20 72 - -
Vian8g01472 307 CDD SANT 77 112 IPR001005 -
Vian8g01472 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01472 Vian-Chr8 34185771 34186986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01472 15 156 MYB Transcription Factor Family AT1G68320 61.644 7.51e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g01472 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01472 K09422 - gmx:100778425 452.21