Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01466 ATGGCGACGCCGCTGACGGGGCTTCAGCACATGGACGGCGGCGGCGGAGTGGCGGTGCTGTCGAATCCGTTGAGTAAGGTGGATTCCTCCGCCAATGGCGGCGGCGGTTTCGGCCTGTCGCTGTCGGAATCGCCAATTCTGATATTCTCGTTCTTCCACAAGGCGATTCGGAACGAGCTGGACGCGCTGCACCGGTTAGCGATGGCGTTCGCCACCGGAAATTGCTCAGACATCCAGCCCCTCTTCCAACGCTATCATTTCCTCAGATCGATGTACAGACACCACTCCAATGCTGAAGATGAGGTGATTTTCCCAGCTCTAGATATACGGGTAAAGAATGTAGCACAGACATATTCCCTTGAACACCAGGGTGAAAGTGAAATTTTTGAACATCTGTTTGAGCTCTTAAACTCTTCCGTCCATAATGTTGAAAGTTTTCCAAAGGAATTAGCTTCCTGCACAGGAGCTCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTCTTGAGAAGTTCTCCCTTGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTCTGTAGTATTCCTGTGAATATGATGACTAAATTTCTTCCGTGGCTCTCAACATCTATATCACCCGATGAATCTCAGGATTTGAGGAAGTGCTTAAGCAAGATAGTTCCAGAGGAAAAACTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGAGAAGTCGTGGTAACGCAGTTGAAAATTGTGTAGATCATTCTCAGGTGCGGTGTAGTAGTAATCCTGTTAGCCATCAGAATGGAAAAATAAAATGTGCATGTGAGTCCACAACAACTGGGAAAAGGAAATATTCTACATGTTTCACAGATGTTTCTGATACCATCACAACACATCCTATAGATGAAATATTGTTTTGGCATAATGCGATAAAAAAAGAGTTAAATGAGATAGCAGTACAGACCAGAAAGATACAACACTCTGGAGATTTTACTAACCTGTCAGCTTTCAATGAAAGGTTGCAATTCATCGCTGAAGTTTGCATATTTCACAGTATTGCTGAAGACAAGGTTATTTTTCCAGCAGTAGATGGAAAATTTTCTTTCCGTAAAGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGTTCTTTAATTGAAAGTATTCAAAGTGAAGGAGCAACATCTAGTTCAGAAACTGAATTTTATTCAACATTGTGTTCACATGCTGATCATATACTGGAAACAATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCTCTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTCTCTATCAAAGCTTATGCATGATGCCATTAAAGTTGATTGAGCGTGTCCTTCCATGGTTGACTAGTTCATTAACTGAAGATGAAGCACAAATGTTTTTGAAAAACATGCAATTGGCAGCTCCAACAATAGATTCTGCTTTAGTCACACTGTTCTGTGGTTGGGCTTGCAAGGCTCGTAAAGATGGTCTGTGTTTGTCTTCTAGTGTGTCAGGCTGCTGTCCAGCCCAGAGAATTACTGATATTGAAGAAAATATTGTTCAATCTTCCTGTCCTGCTTCTGCATTGTCTGGTAGAGATTGCTCATTATTAGCTGAATCAGATGGGACACAACAAAGATCAGTCGAGCAAAACCTACTGGAGGTGCATAATGAAGATGTCTCTGAAGTTTCAGAAAGTGGAAGTATTCAGAAACGATGTTGCAGTTCGCGGTCTTGTTGTGTGCCAGCATTAGGAGTCAGCAGGAACAATTTGGGGCTGGGTTCACTCACTACAACCAAGTCCTTACGCTCTTTGTCTTTCACTGCTTCTGCTCCGTCCATTAATTCTAGTCTTTTCATATGGGAAACTGACAACAGCTCATGTGATGTTGGCTCTACAGAAAGACCAATAGATACCATATTTAAATTTCATAAAGCCATACGCAAAGATTTGGAGTATTTGGACATTGAATCTGGAAAGCTTTGTGATTGTGATGAAACAATCATTCGGCAATTTAGTGGAAGATTCCGGCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCTGCACTTGAATCCAAAGAAGCACTTCATAACGTGAGCCATTCCTACACACTGGATCATAAGCAGGAGGAAAAATTATTTGAAGACATTTCCCGTGTTCTTTCTGAACTTTCCGTCCTTCATGAAGTCTTGCAGAGGACCCGTATGTCAGCAGATTTAAGTGAAAATAGTTTTGGAATTCCTGATGCCAAGGATATGGATAATGTGAAAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATTAGAGTAACCCTAGATCAACATATTTTTAGAGAAGAGCTTGAGCTTTGGCCACTGTTTGGTAAACATTTCACTGTGGAAGAACAAGACAAGATAGTTGGCCGGATAATTGGAACTACAGGTGCTGAGGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACAGAGGATGAACAGAGCAAAATGATGGACACATGGAAACAGGCAACCAAAAATACCATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAAAGTCCTGTATCTACAACACAGGCAGAAGCTTCAGAGCGTAGCACTTCTCAAAGAGGTGGTGATTACCAAGAAAGCTTGAACCTGAATGACCAGATGTTCAAGCCAGGTTGGAAAGACATTTTCAGGATGAATCAGAATGAACTTGAGTCAGAAATACGGAAGGTCTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCGTATCTTGTGCAGAATCTAATGACTAGTCGCTGGATAGCTGCCCAACAAAAGTTACCCAAGGCTCCATCTGGGGAATCGTCCAGTAAACAAATAGAAGGATGCTCACCATCTTTTCGGGACCCAGAGAAACATATATTTGGTTGTGAGCACTATAAGCGAAATTGCAAGCTTCGAGCTGCTTGTTGCGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGCAAGCGATCACTCAATGGATAGAAAAGCAACAATGGAAATGATGTGCATGCAGTGCCTGACTATACAGCCTGTTGGGTCTGTATGTATATCTCCTTCATGTAATGGACTTACAATGGCAAAGTACTATTGCAACATTTGCAAATTCTTCGATGACGAAAGTTATAAATCCTTTGGAAAGAAATATGCCAAGGGAGACCTGAATGGGAAGTATCCCAATGATATGCCCTTATTTGTCTCAGTTATTGCAATGGATGTGTTTGGGATCTATGACTGCAATTGTTGCCTGGGGATAAAATCTGCCTCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGTCCAATTTGCTGTGACGACTTGTTCACATCAAGCGCAACAGTGAGAGCTTTACCGTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGTAGCCACTACACGTGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTCGGTATGCTTGATGCTTTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGTATTACTTCCGATATACTCTGCCATGACTGTGACCGAAAGGGCACTTCACGCTTCCACTGGCTATATCACAAATGTGGATCTTGTGGCTCATACAATACCCGGCCTATCCAATTTTCCCCCAACCAGAAAACTGGTTACATTCCCTTTTATACCAATGCAAGTCACTTGCACGGATGCCTCTCATGAGTTACCTCATCTTCTCGTGAAGGAAAAGAAGAAGATGCTGGTGACGGGGAATAAGAGAGTTAAGTTTTCTGTTTCCCTCTCTAAGGAGGAGGTGGAGCAGGATTTCTGGGCCTTGGTTGGAACTAGGCCCCCCAGAAGGCCCAAGAAGAGGCCCAGGATTGTGCAGAGGCAATTGAATACACTTTTTCCTGGTTTTTGGCTGGCTGAGGTCAGTGCAGAGTCATACAAAGTGGCTGATGTTCCTGAATGA 4065 0.4268 MATPLTGLQHMDGGGGVAVLSNPLSKVDSSANGGGGFGLSLSESPILIFSFFHKAIRNELDALHRLAMAFATGNCSDIQPLFQRYHFLRSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHQGESEIFEHLFELLNSSVHNVESFPKELASCTGALQTSVSQHMAKEEEQVFPLLLEKFSLEEQASLVWQFLCSIPVNMMTKFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVVFTWMEGRSRGNAVENCVDHSQVRCSSNPVSHQNGKIKCACESTTTGKRKYSTCFTDVSDTITTHPIDEILFWHNAIKKELNEIAVQTRKIQHSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGKFSFRKEHAEEESQFNDFRSLIESIQSEGATSSSETEFYSTLCSHADHILETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLTSSLTEDEAQMFLKNMQLAAPTIDSALVTLFCGWACKARKDGLCLSSSVSGCCPAQRITDIEENIVQSSCPASALSGRDCSLLAESDGTQQRSVEQNLLEVHNEDVSEVSESGSIQKRCCSSRSCCVPALGVSRNNLGLGSLTTTKSLRSLSFTASAPSINSSLFIWETDNSSCDVGSTERPIDTIFKFHKAIRKDLEYLDIESGKLCDCDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISRVLSELSVLHEVLQRTRMSADLSENSFGIPDAKDMDNVKKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQSKMMDTWKQATKNTMFNEWLNECLKESPVSTTQAEASERSTSQRGGDYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAPSGESSSKQIEGCSPSFRDPEKHIFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATMEMMCMQCLTIQPVGSVCISPSCNGLTMAKYYCNICKFFDDESYKSFGKKYAKGDLNGKYPNDMPLFVSVIAMDVFGIYDCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQVLLPIYSAMTVTERALHASTGYITNVDLVAHTIPGLSNFPPTRKLVTFPFIPMQVTCTDASHELPHLLVKEKKKMLVTGNKRVKFSVSLSKEEVEQDFWALVGTRPPRRPKKRPRIVQRQLNTLFPGFWLAEVSAESYKVADVPE 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01466 1354 Gene3D nmb1532 protein domain like 44 194 - -
Vian8g01466 1354 Gene3D nmb1532 protein domain like 304 452 - -
Vian8g01466 1354 CDD Hr-like 305 434 - -
Vian8g01466 1354 Pfam Hemerythrin HHE cation binding domain 53 176 IPR012312 -
Vian8g01466 1354 Pfam Hemerythrin HHE cation binding domain 302 436 IPR012312 -
Vian8g01466 1354 Pfam Hemerythrin HHE cation binding domain 650 813 IPR012312 -
Vian8g01466 1354 MobiDBLite consensus disorder prediction 882 904 - -
Vian8g01466 1354 SUPERFAMILY RING/U-box 1133 1182 - -
Vian8g01466 1354 ProSiteProfiles Zinc finger CTCHY-type profile. 1061 1135 IPR017921 -
Vian8g01466 1354 ProSiteProfiles Zinc finger RING-type profile. 1136 1178 IPR001841 -
Vian8g01466 1354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1131 1242 IPR013083 -
Vian8g01466 1354 Gene3D nmb1532 protein domain like 646 889 - -
Vian8g01466 1354 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 693 1211 - -
Vian8g01466 1354 SUPERFAMILY CHY zinc finger-like 989 1053 IPR037274 GO:0008270
Vian8g01466 1354 SMART ring_2 1136 1177 IPR001841 -
Vian8g01466 1354 FunFam Zinc finger protein-related isoform 1 1131 1180 - -
Vian8g01466 1354 ProSiteProfiles Zinc finger CHY-type profile. 989 1058 IPR008913 GO:0008270
Vian8g01466 1354 CDD Hr-like 48 174 - -
Vian8g01466 1354 Pfam Protein of unknown function (DUF1639) 1298 1347 IPR012438 -
Vian8g01466 1354 Pfam Ring finger domain 1135 1177 IPR001841 -
Vian8g01466 1354 Pfam CHY zinc finger 996 1071 IPR008913 GO:0008270
Vian8g01466 1354 CDD Hr-like 652 812 - -
Vian8g01466 1354 CDD RING-H2_Pirh2-like 1135 1178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01466 Vian-Chr8 34116958 34132489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01466 1 1212 C2H2 Transcription Factor Family AT3G18290 62.957 0.0 1550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01466 K16276 - gmx:100791354 2155.95