Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01459 ATGACTAATGAGCAAGATATTGAAGTATTCTTAGAAGATCAGGGAACTCTAGCACAAAAGAAATACAGATTTTCAGAAGTCAAGAAAATGACCAATAACTTCACAGATAAATTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAAAGATACACAATGGTTACCATGTGGCTGTAAAAATATTAAGGGCATCAAAAGGAAATGTCAAAGACTTTATCAATGAGGTTGCCAGCATCAGTAGAACTTCTCATGTTAATGTTGTCCAACTTCTTGGGTTCTGTTTGGAAGGAAAAAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTCATCAGTAATAAGGGACTAGAAAGAACTTCATCTTTGACTTGGGATAATCTGCTGCAAATTGCAAAAGGTATAGCCAAAGGATTAGAGTACTTGCACAAGGGATGCAACACTCGTATTTTACATTTTGACATAAAACCACATAACATTCTTTTGGATGACAACTTCTGTCCCAAGATATCAGACTTTGGGCTTGCAAAACTTTGTCCTGGGAAAGAGAGCACAATTTCAGTTTCATATGCGAGAGGAACAATAGGATATGTAGCTCCAGAAGTGTGCAACAAACATTTTGGTGGAGTATCACAAAAATCTGATGTGTATAGCTTTGGAATGCTGCTACTAGAAATAGTGGGAGTGAGGAATAATATTAATGTTGAAGCCACCGAAACAAGTGAATACTTCCCAGATTGGATATACCGAAAGCTGGAGCAAGACCAAGATTTGAAAAGTGATAATGTGACAGCCACAGAAGAAAAAGAGACGGAAAGGAGAATGATTGCAGTAAGTTTGTGGTGCATTCAAACATTTCCAAAGGATAGACCTACTATGAGTCGAGTAATAGAAATGTTAGAAGGCAACATGAATTCCCAAGAAATACCCCCAAAACCTGTTCTTTCTTCTCCCACAATTGGATTGGTGCCAGAATTGACCACTAGTTCCTTGCAGTCTGAGTAG 1017 0.3815 MTNEQDIEVFLEDQGTLAQKKYRFSEVKKMTNNFTDKLGEGGFGVVYKGKIHNGYHVAVKILRASKGNVKDFINEVASISRTSHVNVVQLLGFCLEGKKKALIYEFMPNGSLDKFISNKGLERTSSLTWDNLLQIAKGIAKGLEYLHKGCNTRILHFDIKPHNILLDDNFCPKISDFGLAKLCPGKESTISVSYARGTIGYVAPEVCNKHFGGVSQKSDVYSFGMLLLEIVGVRNNINVEATETSEYFPDWIYRKLEQDQDLKSDNVTATEEKETERRMIAVSLWCIQTFPKDRPTMSRVIEMLEGNMNSQEIPPKPVLSSPTIGLVPELTTSSLQSE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01459 338 PIRSF ILK 13 312 - -
Vian8g01459 338 Gene3D Phosphorylase Kinase; domain 1 2 106 - -
Vian8g01459 338 Pfam Protein tyrosine and serine/threonine kinase 34 304 IPR001245 GO:0004672|GO:0006468
Vian8g01459 338 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01459 338 SMART serkin_6 32 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01459 338 Gene3D Transferase(Phosphotransferase) domain 1 107 316 - -
Vian8g01459 338 SUPERFAMILY Protein kinase-like (PK-like) 18 305 IPR011009 -
Vian8g01459 338 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 321 IPR045874 GO:0004672
Vian8g01459 338 FunFam PR5-like receptor kinase 107 316 - -
Vian8g01459 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vian8g01459 338 FunFam serine/threonine-protein kinase PBS1-like 2 106 - -
Vian8g01459 338 ProSitePatterns Protein kinases ATP-binding region signature. 38 60 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01459 Vian-Chr8 34031383 34032399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01459 20 334 Receptor kinase-like Gene Family AT1G66910 55.799 2.56e-124 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian8g01459 PK_Tyr_Ser-Thr 8.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01459 - - vum:124821711 612.068