Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01458 ATGAGAGAGAGGCTTGTGAGGGAACTGAGAAAAATTGTGAGCATGGATGATAAACATAGTCACGTCTACACCTCGCCCCTTGCCTTCGCACTCACCGTCTCTTGCTTCCTCTGCATCGCTTTGCCACGTTCCCACTCTCAACCATCTCCACCGTCACCGCCACTTCCACCTCCACCGCCCCAGCTTTGTTCTCATCAGTTATACCGGTGCAACATAAGTGTCTCCGCCATCTTCGATCCTCCCTGGGAAAAGATTCCACCCTCTCAATGTAACGGCGCCGACCCATCATCCCTGCTCAGCTGCCATAGTGGCTATGGATTTCAAAATTTCACAGTGAAGGATATCGACAACACCACTCACACCATGAAACTGATGCCAAGACCCCCTGTCGACCATGTCTGTTCTTCTCAATTTTTTGACGGCTACCAGAACTTCGATTACGACAGCTTCAACTATTCTCTGCTCCCGTATAAGGCGTCAGTGCATAAAATCATCATATACGAAGATTGTCATACAATCCCAAATTTCCCTTCAAAACGAAACTTTACGTGCGGGGATGTTCTGTATTATTTTGAAGAGGGGTACACGGAAAAGGAGATGCTCGACAGATACCCAAAGCTACAAAATTGCAAGAATCATTGGGACGTGCATGCTGCCCGTCCTCTGGATCGTTACGAGGATACTGATGACGGTGCTGGAGTTCTGGAAGAAGCTCTCAATGATGCGTTTGAGGTCAACTACAGTATTCCTGATGGTTGCACAAGATGCAGTGAAAGTGACGAAAGTTGCTCGCCATATGTTTATGACTATGATAAACATGTTTTATGCAACTACTATTGCCTAAATGAACAGTGTTCTCCCAAAAAAAGACTAGTGAATTGGAAAGCGAAAATCGTTATAGGTACTACAAGTGCAGCAACTGCAGTATTCATGCTATGCCTCATAATAATAGGCTGTAGAAAATGCATGTCATCAAGAAGAAAGTTAAATTTTCAGATGACTAATGAGCAAGATATTGAAGTATTCTTAAAAGATCATGGAACTCTAGCACAAAAGAAATACAGATTTTCAGAAGTCAAAAAAATGACTAACAACTTCACAGTTAAATTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAGAGTTAAGCAATGGTTACCATGTGGCTGTAAAATTATTAAGGGCATCCAAAGGAAATGGCAAAGACTTTATCAATGAGGTTGCCAGCATTAGTAGAACATCTCATGTTAATGTTGTCCAACTTCTTGGGTTCTGTTTGGAAGGAAAAAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTCATCAGTAATAAGGGACTAGAAAGAACTTCATCTTTGACTTGGGATAATCTGCTGCAAATTGCAAAAGGTATAGCCAAAGGATTAGAGTACTTGCACAAGGGATGCAACACTCGTATTTTACATTTTGACATAAAACCACATAACATTCTTTTGGATGAGAACTTCTGTCCCAAGATATCAGACTTTGGGCTTGCAAAACTTTGTCCTGGGAAAGAGAGCACTATTTCAGTTTCATATGCGAGAGGAACAATAGGATATGTAGCTCCAGAAGTGTGCAACAAACATTTTGGTGGAGTATCACAAAAATCTGATGTGTATAGTTATGGAATGATGCTACTAGAAATAGTGGGAGTGAGGAATAATATTAATGTTGAAGCCACCGAAACAAGTGAATACTTCCCAGATTGGATATACCGAAAGCTGGAGCAAGACCAAGATTTGAAAAGTGATGATGTGACAGCCACAAAAGAAAAAGAGACAGAAAGGAGAATGATTGCAGTAAGTTTGTGGTGCATTCAAACATTTCCAAAGGATAGACCTACTATGAGTAGAGTAATAGAAATGTTAGAAGGCAACATGAATTCCCAAGAAATACCCCCAAAACCTGTTCTTTCTTCTCCCACAATTGGATTGGTTCCAGAATTGACCACTAGTTCCTTGCAGTCTGAGTAG 2013 0.4128 MRERLVRELRKIVSMDDKHSHVYTSPLAFALTVSCFLCIALPRSHSQPSPPSPPLPPPPPQLCSHQLYRCNISVSAIFDPPWEKIPPSQCNGADPSSLLSCHSGYGFQNFTVKDIDNTTHTMKLMPRPPVDHVCSSQFFDGYQNFDYDSFNYSLLPYKASVHKIIIYEDCHTIPNFPSKRNFTCGDVLYYFEEGYTEKEMLDRYPKLQNCKNHWDVHAARPLDRYEDTDDGAGVLEEALNDAFEVNYSIPDGCTRCSESDESCSPYVYDYDKHVLCNYYCLNEQCSPKKRLVNWKAKIVIGTTSAATAVFMLCLIIIGCRKCMSSRRKLNFQMTNEQDIEVFLKDHGTLAQKKYRFSEVKKMTNNFTVKLGEGGFGVVYKGELSNGYHVAVKLLRASKGNGKDFINEVASISRTSHVNVVQLLGFCLEGKKKALIYEFMPNGSLDKFISNKGLERTSSLTWDNLLQIAKGIAKGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKESTISVSYARGTIGYVAPEVCNKHFGGVSQKSDVYSYGMMLLEIVGVRNNINVEATETSEYFPDWIYRKLEQDQDLKSDDVTATKEKETERRMIAVSLWCIQTFPKDRPTMSRVIEMLEGNMNSQEIPPKPVLSSPTIGLVPELTTSSLQSE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01458 670 FunFam PR5-like receptor kinase 439 648 - -
Vian8g01458 670 Gene3D Phosphorylase Kinase; domain 1 323 438 - -
Vian8g01458 670 PANTHER RUST RESISTANCE KINASE LR10-RELATED 335 653 IPR045874 GO:0004672
Vian8g01458 670 Pfam Protein tyrosine and serine/threonine kinase 367 636 IPR001245 GO:0004672|GO:0006468
Vian8g01458 670 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Vian8g01458 670 SMART serkin_6 364 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01458 670 Gene3D Transferase(Phosphotransferase) domain 1 439 647 - -
Vian8g01458 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vian8g01458 670 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vian8g01458 670 SUPERFAMILY Protein kinase-like (PK-like) 351 637 IPR011009 -
Vian8g01458 670 FunFam serine/threonine-protein kinase PBS1-like 332 438 - -
Vian8g01458 670 ProSiteProfiles Protein kinase domain profile. 364 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01458 Vian-Chr8 33978464 33985706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01458 149 666 Receptor kinase-like Gene Family AT1G66910 41.788 1.54e-123 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian8g01458 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01458 - - vum:124821711 1051.2