Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01457 ATGTATTATTTGTATATATTTCTTTTAACTACTTGCGTTTTTCTTTCCCTCAATGTTGTAGATGTCATTTTATACGCGATAATCGTCATAGGTACTTTCATTGGAGCAATAGGAATATTCATATGCCTCATAATAGGTTGTAGAAAATGTATGTCATCAAGAAGAACGGCTAATGAGCAAGATATTGAAGTATTCTTAAGAGATCATGGAACTCTAGCACAAAAGAAATATAAATTTTCAGAAGTCAAGAAAATGACCAAGAACTTCACAATTAAACTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAGAGTTACGCAATGGTTACCATGTGGCTGTAAAAATATTAACGACATCAAAAGGAAATGGCAAAGACTTTATCAATGAGGTTGCCAGCATCAGTAGAACATCTCATGTTAATGTTGTCCAACTTCTTGGATTCTGTTTAGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTTATCGGTAATAAGGGACTAGAAAGCACTTCATCTTTGAGTTGGGATAATCTGTTGCAAATTGCGAAAGGGATAGCCAGAGGATTAGAGTACCTGCACAAGGGATGCAACACTCGTATTTTACACTTTGACATAAAACCACATAACATTCTTTTGGATGAGAACTTTTGTCCCAAGATATCAGATTTTGGGCTTGCAAAACTTTGTCCTGGGAAAGAGAGCACTATTTCAGTTTCAGATGCGAGAGGAACAATAGGATATGTAGCTCCTGAAGTGTGCAACAAACATTTTGGTGGAGTATCACAAAAATCTGATGTGTATAGCTATGGAATGATGCTACTAGATATTGTGGGAGTGAGGAACAATGTTAATGAAGAAACCACTGAAACAAGTGAATACTTCCCAGATTGGATATACCGAAAGCTGGAGCAAGACCAAGATTTGAGAAGTGATATAGTCACAGAAGAAAAAGAGACAGAAAGGAGAATGATTACAGTTAGTTTGTGGTGCATTCAAACGTTTCCAAAGGATAGACCTACTATGAGTAGAGTAATAGAAATGTTAGAAGGCAACATGAATTCCCAAGAAATACCCCCAAAACCTGTTCTTTCTTATCCCTCCGCTGGATTGGTGCCAGAATGGACCACTACTTCCTTGCAGTCTGAGTAG 1176 0.3741 MYYLYIFLLTTCVFLSLNVVDVILYAIIVIGTFIGAIGIFICLIIGCRKCMSSRRTANEQDIEVFLRDHGTLAQKKYKFSEVKKMTKNFTIKLGEGGFGVVYKGELRNGYHVAVKILTTSKGNGKDFINEVASISRTSHVNVVQLLGFCLEGKKKALIYEFMPNGSLDKFIGNKGLESTSSLSWDNLLQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKESTISVSDARGTIGYVAPEVCNKHFGGVSQKSDVYSYGMMLLDIVGVRNNVNEETTETSEYFPDWIYRKLEQDQDLRSDIVTEEKETERRMITVSLWCIQTFPKDRPTMSRVIEMLEGNMNSQEIPPKPVLSYPSAGLVPEWTTTSLQSE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01457 391 PANTHER RUST RESISTANCE KINASE LR10-RELATED 59 374 IPR045874 GO:0004672
Vian8g01457 391 Gene3D Transferase(Phosphotransferase) domain 1 162 368 - -
Vian8g01457 391 Gene3D Phosphorylase Kinase; domain 1 48 161 - -
Vian8g01457 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vian8g01457 391 FunFam serine/threonine-protein kinase PBS1-like 55 161 - -
Vian8g01457 391 SUPERFAMILY Protein kinase-like (PK-like) 74 358 IPR011009 -
Vian8g01457 391 SMART serkin_6 87 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01457 391 FunFam PR5-like receptor kinase 162 369 - -
Vian8g01457 391 CDD STKc_IRAK 93 359 - -
Vian8g01457 391 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Vian8g01457 391 Pfam Protein tyrosine and serine/threonine kinase 91 357 IPR001245 GO:0004672|GO:0006468
Vian8g01457 391 ProSiteProfiles Protein kinase domain profile. 87 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01457 Vian-Chr8 33972201 33974283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01457 41 387 Receptor kinase-like Gene Family AT1G66910 51.944 1.05e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian8g01457 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01457 - - vum:124821711 704.131