Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01456 ATGGGAGTATTCATTATATGTATCATAGTTTGTTGCTTTAGATACAAGTTATTTACTCCACTGATCAGATGTTGTTTGACCACAAAGAATGACCAAGATATTGAAGCATTCTTAAAAGTTCATGGAGCCGTGTCACAAAAAAGATACAAATTTGCAGAAGTCAAGAAGATGACGAATTCCCTCAAAGTTAAACTTGGTCAAGGTGGTTTCGGTGCAGTGTACAAAGGACAACTACCCTCAGGCATCCCTGTGGCTGTAAAACTATTGAATGGATCCAAAAGAAATGGAGAAGAATTTATGAATGAGGTTGCTAGCATCAGTCGAACCTCTCATGTCAACATTGTGTCACTTCTTGGATTTTGCTTTGAAGGTAGCAAGAAAGCTCTCATCTATGAGTTCATGGCTAATGGTTCTCTGGAAAAGTTTATCTACAAAAGAGGGACAGAAACCATAACATCGTTGAGTTGGGAGAATTTATACCAAATCTCGATAGGAACAGCTCGAGGGTTGGAGTACTTACACAGAGGATGCAACACTCGAATTTTACATTTTGATATAAAACCACATAATATTCTTTTGGATGAGAACTTGTGTCCAAAGATATCAGATTTTGGGTTAGCAAAGCTGTGTCCCAGAAAAGAGAGCATTATTTCCATGGCAGATACTAGAGGAACAATGGGGTATGTGGCTCCAGAAATGTGCAATAGACAATTTGGTGGAGTTTCACACAAGTCAGATGTTTACAGTTATGGGATGATGTTGCTGGAAATGGTAGGAGGGAGGAAGAACATTGATGCTGAAGTGAGTCATACAAGTGAGATATACTTCCCACATTTGGTGCACAAGAGGCTTGCCCTGGACAAGGATTTAAGACCTGATGAAGTGATGAGCACTGAAGAAAATGAGATTGCAAAGCGAATGAGCATAGTAGGTTTATGGTGCATTCAAACCTTTCCAAATGATAGACCTACGATGAGCAAAGTAGTGGACATGCTGGAAGGCAACATCAATTTCTTGGAAATGCCACCAAAACCTATGTTTTCTTCACCTACAAGATCTGACAGCTGA 1068 0.3961 MGVFIICIIVCCFRYKLFTPLIRCCLTTKNDQDIEAFLKVHGAVSQKRYKFAEVKKMTNSLKVKLGQGGFGAVYKGQLPSGIPVAVKLLNGSKRNGEEFMNEVASISRTSHVNIVSLLGFCFEGSKKALIYEFMANGSLEKFIYKRGTETITSLSWENLYQISIGTARGLEYLHRGCNTRILHFDIKPHNILLDENLCPKISDFGLAKLCPRKESIISMADTRGTMGYVAPEMCNRQFGGVSHKSDVYSYGMMLLEMVGGRKNIDAEVSHTSEIYFPHLVHKRLALDKDLRPDEVMSTEENEIAKRMSIVGLWCIQTFPNDRPTMSKVVDMLEGNINFLEMPPKPMFSSPTRSDS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01456 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Vian8g01456 355 FunFam PR5-like receptor kinase 134 344 - -
Vian8g01456 355 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Vian8g01456 355 Gene3D Transferase(Phosphotransferase) domain 1 134 340 - -
Vian8g01456 355 ProSiteProfiles Protein kinase domain profile. 59 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01456 355 Gene3D Phosphorylase Kinase; domain 1 24 133 - -
Vian8g01456 355 CDD STKc_IRAK 65 334 - -
Vian8g01456 355 SMART serkin_6 59 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01456 355 SUPERFAMILY Protein kinase-like (PK-like) 48 333 IPR011009 -
Vian8g01456 355 Pfam Protein kinase domain 62 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01456 355 PANTHER RUST RESISTANCE KINASE LR10-RELATED 31 349 IPR045874 GO:0004672
Vian8g01456 355 FunFam serine/threonine-protein kinase PBS1-like 27 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01456 Vian-Chr8 33908702 33909769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01456 30 348 Receptor kinase-like Gene Family AT4G18250 58.410 3.76e-127 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian8g01456 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01456 - - gmx:100799268 612.068