Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01453 ATGGATGATAAACATAATCACATCCACACCACTCCCCTTGCCTTCGCACTCACCGTCTCTTGCTTCCTCTGCATCGCTTTGCCACGTTCCCACTCTCAACCATCGCCACGGACGCCACCGCCACCTCCACCTCCACCGCCATCTTGGAGCAGTCATACATGTGCTGAGCAGTCATACAAGTGCACCATAAACGTTTCCGGCATCTTGGATCCTGTCTGGAAACAGATTCCAACCTCTCAGTGTATCGGCACCGACCCATTACCCCAGCTCAGCTGCTCTGATCCTTATGAATCTCAAAATTTCACACTGAAGAAGGTCAACCACACCACTCACACCATGACGGTAGTGCCGACACACACTATCAATGATGTTTGTTCTCCTGATTTTTTTCACATTTACGACAACTTGAACAACAGTCTGTTACAATATTACGAGTCAGCGCACAAAGTTATCGTATTTTTTTGTCCTCTCGACGACCCATATCTCCCTTTAGTACGCAGCTTTAAATGTGGGGATGGTGTGTACTATTTTGGGGAGGAGGAGGATGAGATCCAATGGCTTAAGGATTGCAAGAAAAGTTTGTTGGTGCCTATTGCCGCTCCTCTCGATCATTATGATCATAAAGATAACGGAGCTGAAGTTCTGAAAGAAGCTCTGAGGGATGGGTTTGAGGTCTCCTATAGTCCTCCTCAACACTGTAGAGGATGCAACCAAAGTATCAGAAATTGCTGGAGCGGTGGTTATGAGGGACATGTAGTTTCATGCAACTACTATTGCCCAAATCAATACTGTTCTCCCAAGAGTAGTGCAGAAGGAATAAATTGGAAAGCGAAAATCACTATAGGTGTTTGTTCTGGTGTAGTGGGAGCACTTATAGTGGGCATTTGCGTCTATATTTTTATTCGTAGAAGGAAGAACAGTTATGTAATGTCATATATACAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACGGAGAAGGGAAGTCACAGCTTCACTCAAAGCATTATACCTAGAGTTCATCTCTTCTCCTATGAAGAACTGGAAGAGGCCACGAATTACTTTGACCCATCTAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTATTTTGGCAAACTGCGAGATGGGCGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAGGAGAGTTGCACAGTTCATGAATGAAATCAGAATCCTAACTGGTATAGCTCATCCAAATCTTGTGAAGTTATACGGATGCACCTCTCGCCACAGTCGTGAACTTCTGCTTGTATATGAGTACATTCCTAATGGAACTGTTGCAGACCATCTTCATGGTCAACGATCTAAACCTGGAACACTCCCCTGGCATATCAGAATGAATATTGCCGTCGAAACAGCAAGTGCACTGAAATTTCTTCATCTCAGAGATATCATCCACAGAGATGTTAAAACCAACAATATTCTTCTTGACAGCAACTTCCGTGTCAAAGTGGCAGATTTTGGACTCTCGCGTCTTTTCCCAGAACTTGTGACCCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGTTACCAGCTTACTAACAAAAGTGATGTCTATAGTTTTGGAGTGGTGCTGGTTGAACTGATATCATCCCTGCCTGCTGTTGACATCACAAGGCATAGACATGAAATCAATTTGGCCAACATGGCCATTAACAAGATTCACAATCAGACACTGCAAGAGCTTGTGGACCCAAACCTTGGTTTTGAATCAGATTTCAAGGTAAGGAAAATGATAAGTGGTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCGAAAGAGATGAGACCTTCAATGGAAGAAGTGTTGGAGACTCTGAAGGATATACAGAGTGATGGAAAGAGCAAAAGCCAGCCTGAGGTAATGGATATCTCAAGCACATCTGATGATGTTGTGTTGCTGAAGGATGATCCTCCTCCACCGTCACCTGATTCTAATGCTATAAGCAAGACAACAACACCAAATACTAGTGGATGA 2046 0.4423 MDDKHNHIHTTPLAFALTVSCFLCIALPRSHSQPSPRTPPPPPPPPPSWSSHTCAEQSYKCTINVSGILDPVWKQIPTSQCIGTDPLPQLSCSDPYESQNFTLKKVNHTTHTMTVVPTHTINDVCSPDFFHIYDNLNNSLLQYYESAHKVIVFFCPLDDPYLPLVRSFKCGDGVYYFGEEEDEIQWLKDCKKSLLVPIAAPLDHYDHKDNGAEVLKEALRDGFEVSYSPPQHCRGCNQSIRNCWSGGYEGHVVSCNYYCPNQYCSPKSSAEGINWKAKITIGVCSGVVGALIVGICVYIFIRRRKNSYVMSYIQSRSLSSDPSSKDTEKGSHSFTQSIIPRVHLFSYEELEEATNYFDPSKELGEGGFGTVYFGKLRDGRSVAVKRLYENNYRRVAQFMNEIRILTGIAHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRSKPGTLPWHIRMNIAVETASALKFLHLRDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPELVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHNQTLQELVDPNLGFESDFKVRKMISGVAELAFQCLQSSKEMRPSMEEVLETLKDIQSDGKSKSQPEVMDISSTSDDVVLLKDDPPPPSPDSNAISKTTTPNTSG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01453 681 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Vian8g01453 681 Gene3D Phosphorylase Kinase; domain 1 328 433 - -
Vian8g01453 681 SMART serkin_6 357 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01453 681 MobiDBLite consensus disorder prediction 632 681 - -
Vian8g01453 681 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vian8g01453 681 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 35 679 IPR044652 GO:0004672
Vian8g01453 681 MobiDBLite consensus disorder prediction 33 50 - -
Vian8g01453 681 Pfam Protein kinase domain 360 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01453 681 Gene3D Transferase(Phosphotransferase) domain 1 434 655 - -
Vian8g01453 681 SUPERFAMILY Protein kinase-like (PK-like) 339 644 IPR011009 -
Vian8g01453 681 Pfam Wall-associated receptor kinase C-terminal 179 255 IPR032872 -
Vian8g01453 681 CDD TM_EGFR-like 279 306 - -
Vian8g01453 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Vian8g01453 681 ProSiteProfiles Protein kinase domain profile. 357 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01453 681 MobiDBLite consensus disorder prediction 31 51 - -
Vian8g01453 681 FunFam Wall-associated receptor kinase-like 20 434 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01453 Vian-Chr8 33884611 33891587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01453 243 681 Receptor kinase-like Gene Family AT1G25390 53.880 1.43e-147 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian8g01453 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01453 - - gmx:100800873 675.241