Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01451 ATGAGATTTAGGTGGGATCTCTGTCAGTGCTGCTTCCCCAGCACATCTTCTGACACATTTCAAAAGCGCAGTAACTTGAAGTGGCCAATCATTCCCTACAAGGAAATTGAAAAGGCCACAAATAATTTTGATCAATCTCGTCATCTTGGTAGTGGAGAAAGAAAGAAAGGCTTTATCAGTCAGTACTACGGAACACTTGAGGATGGACGTGAGATTACAATCCAGCGCTTTACAGAAGACAAGCGCTACATATTGCAACAGTTTATCAATGAAACTGTTATCCTAAATTACTTACCTCACAAAAATATTGTGTCAATTTACGGATGTACTTCTCATCGTGAGGAACCTCTGCTCGTGCATGAATACCTATCCAGTGGAAATCTTGCTGCACATTTTCGAGGTGAAAAGGACGAAAACATTGCACTACCCTGGCTTAAACGATTGGATATAGCCATTGATATTGCAAATGCATTGGCCTATCTTCACTATTACGGCATCATCCACCGTAATGTGAAATCCAGCAATATTCTCCTAGATGTGAACTTTTCTGCTAAACTTGGTAACCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTTGACACCACCCATGTTACTAGTGATAGAGTAGGTTCAAGTGGTTATATAGACCCAGAGTATTTGACAAAAGGCCAGCTTAGTGTGAAAATTGATGTTTATAGCTTTGGAGTGGTGTTGTGTGAGCTTCTATCATCAAAGCTTTCAATATTCCATATTATGAATGAGGAGGATAATCTTAATACCCTTTTAAGCAGAAAAATTGAAAACAAAACTTTGGTGGAGCTGTTTGATCCAAGACTTGGGTTCCAATCAAACCTTAACATCAAGCAGTTGATGACTGCTACAGCTGAGCTTGCAGTTCTCTGTATGAAATGTCCACAGGAATCGAGGCCAAACATGGAACAGGTGCTAGATATTCTCAATGAAATGAAGCAAGGGAGATATGTAACAAACTCTCACTCAACTAAAGCTTTGAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACTAACAATTTTGGCACCTGCCTTGGTAAGGGAGGGTATGGCAGCGTATACTATGGAAAACTTAAAGATGGACTAGAGGTTGCAATAAAATGTTTCCATGACGAGAATGAGACAGAAGAGACCATTAAGCAATTCATGAAAGAATCAGATATCTTAGGTCTCTTGCACCACCAAAATCTGGTCTCACTCTATGGCCGCACTTCTCGCCATTGCAAGAAACACATGCTAGTGTATGAGTACATCTCCAATGGCACACTTTCTAAACATCTTCATGAGTCTTCCAGTGGTAAACTACCATGGCAAACTAGATTGAATATTGCCATTGAAACTGCAACTGCATTGGTATTTCTTCATGACTCAAGTGTCATCCACCGTGATGTGAAAGGGAGTAACATTCTGTTGGATGAAAATTTTACTGTTAAAGTTGCTGATTTTGGATTCTCACGGTCTCTTCCAGATCATGTTACTCATGTTACAACTATTCCAGTAGGAACTCGTGCTTATATAGATCCTGACTACTATATATCTGGAAGGGTCAGTAACAAAAGTGATGTATATAGTTTTGGAGTGGTCTTGTTTGAACTCATATCATCTATCCACCCAAGTTTAGTTGCAGGCACAGATAATGAGACTCTGGCACAATTTGCAAAGAGAAAAATCTTGAACAATGAATTAAACGAGATAGTTGATGAAAGCTTTTCCTGTGGTTCTGACAAGAACATTTTGGAAATGATATCAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAGTTCAGACCATCCATGAAACAGGTGCTAGAGACCTTGGAAGGCATAAGTAAAGGAAAATGGGGATTCAACCAGATGACATAG 1914 0.3976 MRFRWDLCQCCFPSTSSDTFQKRSNLKWPIIPYKEIEKATNNFDQSRHLGSGERKKGFISQYYGTLEDGREITIQRFTEDKRYILQQFINETVILNYLPHKNIVSIYGCTSHREEPLLVHEYLSSGNLAAHFRGEKDENIALPWLKRLDIAIDIANALAYLHYYGIIHRNVKSSNILLDVNFSAKLGNLHLSCKLPDGVPVDTTHVTSDRVGSSGYIDPEYLTKGQLSVKIDVYSFGVVLCELLSSKLSIFHIMNEEDNLNTLLSRKIENKTLVELFDPRLGFQSNLNIKQLMTATAELAVLCMKCPQESRPNMEQVLDILNEMKQGRYVTNSHSTKALKIFHHAELEEATNNFGTCLGKGGYGSVYYGKLKDGLEVAIKCFHDENETEETIKQFMKESDILGLLHHQNLVSLYGRTSRHCKKHMLVYEYISNGTLSKHLHESSSGKLPWQTRLNIAIETATALVFLHDSSVIHRDVKGSNILLDENFTVKVADFGFSRSLPDHVTHVTTIPVGTRAYIDPDYYISGRVSNKSDVYSFGVVLFELISSIHPSLVAGTDNETLAQFAKRKILNNELNEIVDESFSCGSDKNILEMISAVAELAFQCVQCPKEFRPSMKQVLETLEGISKGKWGFNQMT 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01451 637 SUPERFAMILY Protein kinase-like (PK-like) 23 326 IPR011009 -
Vian8g01451 637 Pfam Protein tyrosine and serine/threonine kinase 354 623 IPR001245 GO:0004672|GO:0006468
Vian8g01451 637 Gene3D Phosphorylase Kinase; domain 1 327 430 - -
Vian8g01451 637 FunFam Wall-associated receptor kinase 3 431 637 - -
Vian8g01451 637 Gene3D Transferase(Phosphotransferase) domain 1 123 326 - -
Vian8g01451 637 Pfam Protein kinase domain 67 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01451 637 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01451 637 Gene3D Transferase(Phosphotransferase) domain 1 431 633 - -
Vian8g01451 637 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Vian8g01451 637 SMART serkin_6 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01451 637 SMART serkin_6 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01451 637 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01451 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 337 630 IPR044652 GO:0004672
Vian8g01451 637 SUPERFAMILY Protein kinase-like (PK-like) 336 626 IPR011009 -
Vian8g01451 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vian8g01451 637 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01451 Vian-Chr8 33863748 33866289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01451 339 626 Receptor kinase-like Gene Family AT1G25390 50.340 5.48e-87 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian8g01451 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01451 - - vra:106773095 1249.19