Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01440 ATGCCTGTTGTGACTGAACACATGAAATGGAGAAGACCAAGAAACCAATTCGGATGCCCCATTTCAGAAACTGATCCAAACCCTCAAATCCCTTCTACAATTCAATCATCTCACACCAAATTCACCATCTCCTCTCTCTTATCTTCATTCTCCACCTCTAATGAAACCACACATGTCAGAGACCAAAACAGCACCAAAAACAGCAAAAAATTCTCTACAGCAAGCTTCAGAGGACTCGGTTGCACTGTCAGAGCATCACAGAAGGTTTCTGTGCCCACGGTGATCCGGTCCTCGGCGGATTGGGAAGGAAAGAGGAACAGGAAGAAAAAGCACAAGAGGAACGGTAACAGTAGCAGTAACAAGACATGTGATGGGGTTGTTGATGATGTTTCTGGTGGAACATGTGTGGATTTTCAGGATGTTTGGTGTGGTCCCGGTATTGGGTTCTCAACAGATGCTGCTGCTGCTGCTGCATCTGTGGACTGTGTTGTGGCTAGGAAGGATGTTTCTGCAAGAGGAAAACTTGATGTGGTGGAGAGGGAGCGTTCATCTTACTTTGGAAGGCGCATTGTAAAGCCAGAAAATTTCTCTTTTCTGGATGATGAATCTGATATCTTCACAGCACGTACTGGGTTAGACCCTTTTGGAACTGCTAGATTCTATCGCCACGTTCCACATCCTTCTCCTGATGGTCTTCCTGAGATAATGATAATCCGAGGAAGAAGAATAATAATGGGGGGTCGCTTTAACTCGCACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAGCTGGGTGAGAGAATAGGTCATGTCAGCACTGGACTCAAAGAAGATGAGATGGGACACAACATAAGAAAAGTTAAACTTTCAAGTTCAAATGATGCATCAAAGCATCAAGAAGACAAAAAGTGCAGTGTTTGTCAGGAGGAGTATGAAGCAGGTGATGAGTTGGGGAAATTGAAGTGTGATCACAGCTATCACTTTCAGTGTATAAAACAGTGGCTTGTGCATAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTGGTTCGACCCTAA 1086 0.4392 MPVVTEHMKWRRPRNQFGCPISETDPNPQIPSTIQSSHTKFTISSLLSSFSTSNETTHVRDQNSTKNSKKFSTASFRGLGCTVRASQKVSVPTVIRSSADWEGKRNRKKKHKRNGNSSSNKTCDGVVDDVSGGTCVDFQDVWCGPGIGFSTDAAAAAASVDCVVARKDVSARGKLDVVERERSSYFGRRIVKPENFSFLDDESDIFTARTGLDPFGTARFYRHVPHPSPDGLPEIMIIRGRRIIMGGRFNSHDQFRDWRLDVDNMSYEQLLELGERIGHVSTGLKEDEMGHNIRKVKLSSSNDASKHQEDKKCSVCQEEYEAGDELGKLKCDHSYHFQCIKQWLVHKNFCPVCKQEVVVRP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01440 361 Pfam Ring finger domain 312 354 IPR001841 -
Vian8g01440 361 SUPERFAMILY RING/U-box 306 359 - -
Vian8g01440 361 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Vian8g01440 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 26 357 IPR045191 GO:0061630
Vian8g01440 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 359 IPR013083 -
Vian8g01440 361 MobiDBLite consensus disorder prediction 94 121 - -
Vian8g01440 361 FunFam E3 ubiquitin-protein ligase rnf12-A 280 359 - -
Vian8g01440 361 SMART ring_2 313 353 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01440 Vian-Chr8 33764381 33768915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01440 4 268 C3H Transcription Factor Family AT1G73760 40.493 3.33e-48 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01440 - - gmx:100818517 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01440 8 33764381 33768915 Vian1g04175 1 64778476 64781645 ECH
Vian8g01440 8 33764381 33768915 Vian8g01440 8 33764381 33768915 ECH