Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01418 ATGCACCAAACCTTTACACTCACTCTTTCACTCCTAAGAAGCCCTAACACTCTCAATGCGATGACTCCTCGCGTCGACGATTTCGAAAACGACAATCTCTCCTCCACCGACGACGATGATGACGACGGCTTCAAGGATGATATGGCCGCGCTCTCCCGAGCCTGCATGATCGTCGTCCCTGGCGCCGATGATAATTTCGCAGCTGAAGACGATGTTCCATCTTTGGAACCTCTCACTGACGCCGGCACTGCCATTGTTCCCGTCGCCACCGACTCGGACTCCGACGACCAGGATGACCTCGAATGTCTTAAGAGAGTGCAGAGTCTATACCAGCCTCTGTCCGTTCTTCCCCCACTTGAGCCGGCGGTGGTCGTGTCTGACGACGACGATGGCGTGGATGACCTCGAGACCGTGCGCGCCATCATGAAAAGGTTTGGCGACTACAGCGAAGGTTTGCATGAAGGTGGGATAAAAAAGTTGGTTGCGGAGGATCAGATCTCCAGCATGGGCTGTGAGGGTGACATCGCTAATGGCTCAACCCATTACGAACCAGATGGTGGTGCATTATGTCCTTTTTCTCAAAATCCTATGGAGGCTGCCACAGAGGAGTTGATTGAAAACATTGAAATGCAGCTTAGCGATTTTGTTGAGAGTTCTGAACCTGATGCCTGGGAGTCATCTAGATTACAACAGAAAAGATTGAGCTGTCCTCCTGTTGTTCAGTGTTTTATTGACGCCATTAAGAAAAATAGGGATTTACAGAGATTTCTTAGAGGTAAGTTGATTGAGCTTGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAATAAAATTAAAATTCTTAAGGACTTCCAGGCTTCATGCACTAGAAGAACAGGGAACGTGTTATCACTGAAAAAAGATCCACGTGTTCAATTAATATCAGCAAAACGGTCTCCAAAGAAGTCTAAGCCTTTGATTAGAAGGTTAAATTTACAGTCTTTGTTATTGGATTTGGGTATTATGCCTGATTTGGGGTTACTGGCTGGCAACATGGCATTTGTCACCTTCTTAGTTTTGTCGAAGTGTCAATTGTCACTGATTATATTGGAAATCCTTGATCCAACTTTTTCCTGGCAGAAACGTAGAAAGGTAACTTCAATATGTTATGGCCCAGAAGAAAATTCTCGTGTTGCTAATTATAGGATGGTATTGGAAAGATTTCCACTTTCCTTGGAAAGGAAAAAATGGTCTAAGGCAGACAGGGGAAATCTTTTTAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTGAACTCTCACTTTCACTTGATAGAACAAGTTCAGAGGGCTTGCTTGGAAATGCTGATGACATGGATAATATAATTGCATCTGTTGAGGATCTCGAAGTCACACCAGAGAGGATTAGAATTTTTTTGCCTAAAGTTAATTGGGATCTCATAGCTTCTATGTATGTTGGTTGCCATACTGGTTCTGAATGTGAATCAAGGTGGTTGAATTATGAAGATCCTTTGGTCAACCAAGGTGCATGGACTAAGGAAGAGGACAAGTCCCTTTTACTTATTGTCCAAGATATGGGCATCAGGAACTGGTTCAGTATTGCTTCAGCATTGGGCACAAGCAGGACTCCATTTCAATGCTTGTCACGATTCCAAAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTATGTTCTGCGGTGACATATTTTGGTGATAGCAACTGGCAGTGTGTGGCTTCTGTTCTAGAACGGCGGACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCCCTCTGTCCGGAGAAGAAAGGGAGCTTTACACGAGAGGAAGATATACGCTTAACAGTAGCAGTCATGCTTTTTGGGCGGAAATGGAATCAAATAGCTAATTATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAAATTGGAAGATGCAATTGCCAAGCATGGATATTGCTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCTCAATGCCGAAAGAGATGGAAGGTGTTATGTCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAAAGGTCTATTATTGGTAGTAACTTCGTTGATCGAGAATCTGAACGCCCAACCATTACACTTAATGACTTTCTACCTTTACTTGCGTTAGCTCCAAAATCTGATGTTGGTTCTTCAAACATCAGGAAGAAGCACAAGTCATGTAATGTTCCCAAGAAAAAGAGCTCTAAGAAAGGTGCAAAAAGAACTAAACGCACTAAAGAAGTACGAGATACAGAGGTATATCACGATGATGAGTTCTACTCTATCTCTGCACGCAGCAATCATCCCCAGAAAAAGATGAAGTCCAAAAGACGCACAAAAAGTAGTCGAAATTCTCCCCATGAATTAGTGGATGTCTCTTGTAGTGACAAGGTGACTTGCATTGAGGGTTCAGAAAACCAGTCTACCTGTGTTACCAATTTTGAAAATCAAGATTCAGACAGCATAACCCTTTCATGTTTTTTACGCAACAAATCAAATGAGACATTATCTAGATTTACCAAAAATTTAAGTCAGACTTCCTTCGCTAGGATTACTGATGTTCCTGAGCAGGCGGAAAGTCAAAACCCATCTGATGATCAAGGCGGTTTGTCTCATTCACGCGAGACAGTTGGAACTAAAAATTTGTTCGTGCAGCCGAATATTGCTTCTGATAGAGTGAGAAACCAGGAGGATACAAATACTTGGACAAGTGATGATGATGATGATGACGACCAGATGACCCTTGCATGCATTCTGAAAAAAATCCCAAGAAAGGGTCACCCTGCCAAATTAAAAACAGGATCTGTATTATTAAATGAAGAACATAGTGCAAGCAAGCCAACCATCATATCTGATGACAGTGGACCGTCAATGTCAAAGCATGTTGAAGATATGGAGACTGTTGTACATGGTTCTGTTGCTAAACCAACCCATATCATTGTGGAAGAAAAGGATGACGAGCTTTTTCCTCCCCTAACGCAATACAGGCCACGGAGGGAGCGAAAACGTCCCTGTAGATATTTGTAG 3153 0.4291 MHQTFTLTLSLLRSPNTLNAMTPRVDDFENDNLSSTDDDDDDGFKDDMAALSRACMIVVPGADDNFAAEDDVPSLEPLTDAGTAIVPVATDSDSDDQDDLECLKRVQSLYQPLSVLPPLEPAVVVSDDDDGVDDLETVRAIMKRFGDYSEGLHEGGIKKLVAEDQISSMGCEGDIANGSTHYEPDGGALCPFSQNPMEAATEELIENIEMQLSDFVESSEPDAWESSRLQQKRLSCPPVVQCFIDAIKKNRDLQRFLRGKLIELEAKIEENKKIRNKIKILKDFQASCTRRTGNVLSLKKDPRVQLISAKRSPKKSKPLIRRLNLQSLLLDLGIMPDLGLLAGNMAFVTFLVLSKCQLSLIILEILDPTFSWQKRRKVTSICYGPEENSRVANYRMVLERFPLSLERKKWSKADRGNLFKGIKQQFQEMVLELSLSLDRTSSEGLLGNADDMDNIIASVEDLEVTPERIRIFLPKVNWDLIASMYVGCHTGSECESRWLNYEDPLVNQGAWTKEEDKSLLLIVQDMGIRNWFSIASALGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDAQLCSAVTYFGDSNWQCVASVLERRTGTQCSNRWKKSLCPEKKGSFTREEDIRLTVAVMLFGRKWNQIANYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLKLEDAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIIGSNFVDRESERPTITLNDFLPLLALAPKSDVGSSNIRKKHKSCNVPKKKSSKKGAKRTKRTKEVRDTEVYHDDEFYSISARSNHPQKKMKSKRRTKSSRNSPHELVDVSCSDKVTCIEGSENQSTCVTNFENQDSDSITLSCFLRNKSNETLSRFTKNLSQTSFARITDVPEQAESQNPSDDQGGLSHSRETVGTKNLFVQPNIASDRVRNQEDTNTWTSDDDDDDDQMTLACILKKIPRKGHPAKLKTGSVLLNEEHSASKPTIISDDSGPSMSKHVEDMETVVHGSVAKPTHIIVEEKDDELFPPLTQYRPRRERKRPCRYL 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01418 1050 ProSiteProfiles Myb-like domain profile. 611 657 IPR001005 -
Vian8g01418 1050 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 503 555 IPR017930 -
Vian8g01418 1050 ProSiteProfiles Myb-like domain profile. 658 708 IPR001005 -
Vian8g01418 1050 MobiDBLite consensus disorder prediction 896 928 - -
Vian8g01418 1050 SUPERFAMILY Homeodomain-like 559 653 IPR009057 -
Vian8g01418 1050 MobiDBLite consensus disorder prediction 757 830 - -
Vian8g01418 1050 ProSiteProfiles Myb-like domain profile. 556 607 IPR001005 -
Vian8g01418 1050 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 658 712 IPR017930 -
Vian8g01418 1050 Gene3D - 562 610 - -
Vian8g01418 1050 Gene3D - 506 555 - -
Vian8g01418 1050 SUPERFAMILY Homeodomain-like 484 552 IPR009057 -
Vian8g01418 1050 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 612 657 IPR017930 -
Vian8g01418 1050 MobiDBLite consensus disorder prediction 786 804 - -
Vian8g01418 1050 Pfam Myb-like DNA-binding domain 665 706 IPR001005 -
Vian8g01418 1050 Pfam Myb-like DNA-binding domain 612 655 IPR001005 -
Vian8g01418 1050 SMART sant 406 504 IPR001005 -
Vian8g01418 1050 SMART sant 662 710 IPR001005 -
Vian8g01418 1050 SMART sant 560 609 IPR001005 -
Vian8g01418 1050 SMART sant 507 557 IPR001005 -
Vian8g01418 1050 SMART sant 611 659 IPR001005 -
Vian8g01418 1050 CDD SANT 510 555 IPR001005 -
Vian8g01418 1050 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 35 917 - -
Vian8g01418 1050 Gene3D - 611 663 - -
Vian8g01418 1050 MobiDBLite consensus disorder prediction 22 44 - -
Vian8g01418 1050 CDD SANT 666 707 IPR001005 -
Vian8g01418 1050 Pfam Myb-like DNA-binding domain 511 572 - -
Vian8g01418 1050 MobiDBLite consensus disorder prediction 766 785 - -
Vian8g01418 1050 ProSiteProfiles SANT domain profile. 666 709 IPR017884 -
Vian8g01418 1050 CDD SANT 614 657 IPR001005 -
Vian8g01418 1050 MobiDBLite consensus disorder prediction 1027 1050 - -
Vian8g01418 1050 CDD SANT 563 607 IPR001005 -
Vian8g01418 1050 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 556 611 IPR017930 -
Vian8g01418 1050 ProSiteProfiles Myb-like domain profile. 503 555 IPR001005 -
Vian8g01418 1050 SUPERFAMILY Homeodomain-like 637 709 IPR009057 -
Vian8g01418 1050 Gene3D - 665 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01418 Vian-Chr8 33506668 33514443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01418 235 756 MYB-Related Transcription Factor Family AT3G18100 47.719 8.26e-159 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g01418 Myb_DNA-bind_6 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01418 K09422 - gmx:778073 1301.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01418 8 33506668 33514443 Vian8g01418 8 33506668 33514443 ECH