Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01409 ATGGAGCCATCCTCGATCCCCCCACCGCCAGCTCCGCCAGCCACCGCCGTCCCGTTCCCGGCCGACACCAACGACCACCTCCCGGCGCCCATTGCAGAGCCGCCGTCAAATCACCCGCCCTACGCCGAGATGATATACACCGCAATCGAGGCGCTGAAGGAGAAAGACGGTTCGAGCAAGAAGGCGATAGGGAAGTACATGGAGCAAGTTTACAAGGACCAGCTTCCTCCGAATCACTCCACCTTGTTGACTCAGCACTTGACTCGGATGAAGACCAGTGGAATGCTCGTCATGGTGAAGAAGTCCTACGCGCTTCCTAGATCTGCTGCTGCAGCTGCCACTGCTGCTGCGGAGGAACCTGTGCCTGTGCCCTCTCCTTCAACCCTTCCCAGGCCCAGAGGTCGGCCCCGAAAGGCCCAAACCCCTGTCCACAACCTTCCCCAGCCTCTGGCTCAGGACCAGGACGCTGTAATCCCATCGGTTCAGCAGAATGCTGAACCAGTCTGGGCGGCGCTTGGGCTTGCTGACGAGCCTGTGCAAGCTGAGACCCCAAAGAAGCGTCCTGGCCGACCGAAGAAATTGGCCACTGGAGCCCCTGGAACGGGGCGGAGAGGCCGTCCTGTTGGCTCTGGCAAAGGCCCGGGTCGACCTCCTAAGCCGAAATCCATTGCTTCAGACACTTCTCTTTCTGCCTCTGCAGGGTCAAAGAGACGCCCGGGCCGCCCGCCTAAGAATCAGACCCAAGCAACTCAAATTCCATTTGCTCCATCTACACCTACTGCTGGTGCGGATGCCGGTGCCGGTGCTGAGGCTGGGGCTGTTTTGCCGGTCTCAGAGCCTGTGGAAGAACAGGCTCCTGCAGGTGATGGAATTATACTCGGGCCTAGAGTCCGTGGTCGACCGAAGAAGTTTGCTGATGAGATGATTTCCTCCGGCCGAGGCAGGGGAAGGGGTCGTGGACGAGGGCGTGGGCGTGTTGGTGGTTTGCAGTTCGCCAGACCTGGAGTTAGGTCCGTTGGCCGCCCGAGGAAGGGGTCAACTTTTGCTGGATCTCCACCAAATGCTGCTCATGAAGAACTCAAAAGGAAGCTGGAACACTTTGTGACAATCGAAAGTGAAGGAATCCCTGGCAGTGATTAA 1140 0.5886 MEPSSIPPPPAPPATAVPFPADTNDHLPAPIAEPPSNHPPYAEMIYTAIEALKEKDGSSKKAIGKYMEQVYKDQLPPNHSTLLTQHLTRMKTSGMLVMVKKSYALPRSAAAAATAAAEEPVPVPSPSTLPRPRGRPRKAQTPVHNLPQPLAQDQDAVIPSVQQNAEPVWAALGLADEPVQAETPKKRPGRPKKLATGAPGTGRRGRPVGSGKGPGRPPKPKSIASDTSLSASAGSKRRPGRPPKNQTQATQIPFAPSTPTAGADAGAGAEAGAVLPVSEPVEEQAPAGDGIILGPRVRGRPKKFADEMISSGRGRGRGRGRGRGRVGGLQFARPGVRSVGRPRKGSTFAGSPPNAAHEELKRKLEHFVTIESEGIPGSD 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01409 379 Gene3D - 34 119 IPR036388 -
Vian8g01409 379 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian8g01409 379 MobiDBLite consensus disorder prediction 1 17 - -
Vian8g01409 379 FunFam Histone H1.2 34 115 - -
Vian8g01409 379 SMART AT_hook_2 185 197 IPR017956 GO:0003677
Vian8g01409 379 SMART AT_hook_2 236 248 IPR017956 GO:0003677
Vian8g01409 379 SMART AT_hook_2 295 307 IPR017956 GO:0003677
Vian8g01409 379 SMART AT_hook_2 211 223 IPR017956 GO:0003677
Vian8g01409 379 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Vian8g01409 379 SMART AT_hook_2 336 348 IPR017956 GO:0003677
Vian8g01409 379 MobiDBLite consensus disorder prediction 241 257 - -
Vian8g01409 379 SUPERFAMILY "Winged helix" DNA-binding domain 34 116 IPR036390 -
Vian8g01409 379 CDD H15 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian8g01409 379 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian8g01409 379 MobiDBLite consensus disorder prediction 299 314 - -
Vian8g01409 379 MobiDBLite consensus disorder prediction 176 357 - -
Vian8g01409 379 PRINTS Histone H5 signature 181 200 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vian8g01409 379 PRINTS Histone H5 signature 24 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vian8g01409 379 PRINTS Histone H5 signature 125 139 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vian8g01409 379 PRINTS Histone H5 signature 51 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vian8g01409 379 MobiDBLite consensus disorder prediction 114 146 - -
Vian8g01409 379 PRINTS AT-hook-like domain signature 183 194 IPR017956 GO:0003677
Vian8g01409 379 PRINTS AT-hook-like domain signature 130 140 IPR017956 GO:0003677
Vian8g01409 379 PRINTS AT-hook-like domain signature 209 219 IPR017956 GO:0003677
Vian8g01409 379 PANTHER HISTONE H1 17 246 - -
Vian8g01409 379 MobiDBLite consensus disorder prediction 1 40 - -
Vian8g01409 379 Pfam linker histone H1 and H5 family 38 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01409 Vian-Chr8 33378391 33383342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01409 44 109 Single Myb Histone (SMH) Gene Family AT1G49950 39.394 3.23e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01409 - - vun:114182142 557.37