Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01405 ATGGAGGAATTGGATTCAATACCAAAGACTCTGATGGAAAATCTGCTTGGTCTTTTGAGGGTTCGCGTGAAGCGTGGTATCAACCTTGCCGTTCGTGATGTCCGAAGTAGCGACCCTTATGTTGTCATCAAGATGTTCAATCAGAAACTAAAGACTCGTGTCATTAAAAAGGATGTGAATCCGGAGTGGAATGAAGACCTTACACTTTCTATTATAGATCCGAATCACCAAGTTAAACTGACTGTGTATGATCATGACACCTTCAGCAAAGATGACAGAATGGGAGATGCAGAATTTGACATCTTTCCCTTTATAGAAGCGTTGAAGAGCAACTTAAGTGGCATTCCAAATGGAACTGTGATAAAAAGAATACAACCAAGCAGGGAGAACTTCCTGGCTGATGAGAGCTGCATCACTTATGCCAATGGCAAGTTTGTGCAAGATATGATCCTTAGATTGCAGAATGTGGAATGTGGTGAAGTTGAAATTCAGTTGCAGTGGATTGATCTTCCTGGTGCTAAGGGTATAGCCAAGGGTACATGA 543 0.418 MEELDSIPKTLMENLLGLLRVRVKRGINLAVRDVRSSDPYVVIKMFNQKLKTRVIKKDVNPEWNEDLTLSIIDPNHQVKLTVYDHDTFSKDDRMGDAEFDIFPFIEALKSNLSGIPNGTVIKRIQPSRENFLADESCITYANGKFVQDMILRLQNVECGEVEIQLQWIDLPGAKGIAKGT 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01405 180 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
Vian8g01405 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 102 IPR035892 -
Vian8g01405 180 Pfam C2 domain 17 101 IPR000008 -
Vian8g01405 180 CDD C2_ArfGAP 16 159 - -
Vian8g01405 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 14 174 IPR044562 -
Vian8g01405 180 Gene3D C2 domain 13 175 IPR035892 -
Vian8g01405 180 SMART C2_3c 18 113 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01405 Vian-Chr8 33316225 33317860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01405 49 178 C2H2 Transcription Factor Family AT1G70790 59.091 5.79e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01405 - - gmx:100810504 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02656 2 47378594 47380468 Vian8g01405 8 33316225 33317860 ECH
Vian8g01405 8 33316225 33317860 Vian8g01405 8 33316225 33317860 ECH
Vian1g04216 1 65101900 65104274 Vian8g01405 8 33316225 33317860 PCT