Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01393 ATGGAGAGGGAATTTTTTGACTTGAGTTCCAAAAGCATGAAAGATGATGCTGCTAACAAACCAAAAGACCCAGCGAGGAGTTCAGGAATGCAGTGGTCATTCCCAAACAAGGTTTCAGTCCTTCCTCAGTTCCTTTCCTTCAAGACCAATCAGGAAGACAGGCCTAGAAAGACTATTATTGATTCACTAGCTTCATCTGGATATATGAACATGCCATCTAAAGAGGCTTTTGAGTCTAACCAGAAACCATTTTTGGGTGTGGCTCAGAGAAATTTGTACATAGGCAAGCATAGTGCAGGAAACAAACAGGGAAGGACAGTTTATCCAATGCAATGTATTGATGCACAATGTGCATGCCTTCAGGAGGCAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGTGAGTCCTGCTCTTCAGTCTAATCTTGCTACAACCGGATTGAACATGGTCAATTCAGTCATAAAACCACAACCTCTTGGTTCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGATCCACTGACTTAAGGAATAGTTCCAAATCCTCTGGCATGGCTACACAGCTCACCATTTTCTATTCTGGTTCCGTATGTGTTTATAACGACATAACTCCTGAGAAGGCCAAGGATATAATGTTAATGGCTGGAAATGGGTCTGCCCCAACTCAGAAAATGGCAGTTTCCACAGCTAAATTGCAGACAGCGGTTTCTATTCCCTCCAAAGATGATGGTTTCATTATGAGCCAATCATATTCTCCCTCACCCCTCCCAACCTCTCTCTCATTGACCTCTCATGTCAATTCTCAGCCAGGAGCTGGAACTTCTAGCTACAATAAGCCTGCAATAATAAGACCAATAGTAGGATCTTCAATTGCCCCTACTAACCATTTGGAGTCACCTATCATTGTTGGTTCTGTAGGATCTGCATCTAAGGAAAGTGCTCAACCAGTATACTTGCCTCAGGCACGCAAAGCATCCTTGACTCGGTTTTTGGAGAAGAGAAAGGAAAGGATGACGAGCACATCACCATACTTTTATATGAGCAAGAAATCATATGAAAGCTGCTCATCTGGATCAGACAGTGTTAGTTTCTCCCTTAACTTCTCTGGATCCTGTTCTGTACCAGCCACCAACTAG 1161 0.4272 MEREFFDLSSKSMKDDAANKPKDPARSSGMQWSFPNKVSVLPQFLSFKTNQEDRPRKTIIDSLASSGYMNMPSKEAFESNQKPFLGVAQRNLYIGKHSAGNKQGRTVYPMQCIDAQCACLQEARIFSVSNQSNQVSPALQSNLATTGLNMVNSVIKPQPLGSKSSGTPLSVLPSIGSIVGSTDLRNSSKSSGMATQLTIFYSGSVCVYNDITPEKAKDIMLMAGNGSAPTQKMAVSTAKLQTAVSIPSKDDGFIMSQSYSPSPLPTSLSLTSHVNSQPGAGTSSYNKPAIIRPIVGSSIAPTNHLESPIIVGSVGSASKESAQPVYLPQARKASLTRFLEKRKERMTSTSPYFYMSKKSYESCSSGSDSVSFSLNFSGSCSVPATN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01393 386 SMART tify_2 190 225 IPR010399 -
Vian8g01393 386 Pfam Jas motif 328 352 IPR018467 -
Vian8g01393 386 MobiDBLite consensus disorder prediction 1 31 - -
Vian8g01393 386 Pfam tify domain 194 224 IPR010399 -
Vian8g01393 386 MobiDBLite consensus disorder prediction 1 22 - -
Vian8g01393 386 ProSiteProfiles Tify domain profile. 190 225 IPR010399 -
Vian8g01393 386 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 130 363 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01393 Vian-Chr8 33122823 33128188 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01393 30 363 Tify Gene Family AT3G17860 37.644 3.01e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vian8g01393 tify 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01393 K13464 - gmx:100807288 534.643