Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01390 ATGCAACGTTCTCACAAACTCTTTCCCACCATTCTCTTTCTCTTTTCCTTCTTTTCTTCAACACTCTCCGACCTCTCGTCGGAGCGCGCGGCGCTCCTCGCCCTGCGCTCCGCCGTGCGCGGCCGTACGCTCCTCTGGAACACCACCTTCCGCTCGCCTTGCGTCTGGCCCGGCGTCCAATGCGATGCCGCCAATGCCACCGTGGTGGAGCTTCACCTCCCTGCCGTCGCTCTCTCCGGCGAGCTTCCGGACGGTGTGTTCCCGGAGCTCCCCAACCTCCACACCCTCAGCCTCCGCGTCAACTCCCTCTCTGGCACCCTCCCGGCCGACCTTGCTGCCTGCACCGCCCTCCGCAACCTATTCCTCCAACAGAACCACTTCGCCGGCGAGGTGCCGGCGTTTCTCTCCGGCATGACTGGCCTCGTCCGGCTCAATTTGGCCTCCAACAACTTTTCCGGCCCATTTCCGAACCGGTTCGGGAACCTCACCCGGTTGAGGACCCTTTTCCTTGAGAATAATCGGCTCACTGGTTCGATACCCGGTTTGGAGGAACTCGGTGAATTGGCTCAGTTTAATGTCTCTTACAACATGTTAAACGGTTCTGTTCCTAAAAAGTTGCAGACTTTTGATAAAGATTCGTTTTTGGGCAATACCCTTTGTGGGAAGCCACTTGGGATTTGTCCCTGGGATGATGGAGGTGGCGAGAGTGGTGTAAATGGGAGTTCAAATTCAAGTGGGGTTGGAGGAGGTGGAGGGAGTGTGATTGGAGGGGGAAAGAAGAAGGGGAAGCTTTCTGGGGGTGCAATTGCAGGGATTGTTGTTGGGTGCGTGGTGGCTCTTTTGTTGGTTCTCTTTGCTTTGATTATTTTGTGTAGAAGTGGGAACAAGACTAGGAGTGTTGATAATGTTAGCAACGTGGTGGGCTTGAAGGAGGAACCTCAACAGCATGGGGAGGTGGGAATTGAGGGTGGTAATGTGGAGAGTGGTGGTGGTGGTGGTGGGGATTCGGTGGCCGCAGCGGCGGCGGCGGCGGCGGCGGCAGTGGCGGCAGTGGGTGGGAATGGAGTTGGCGGTGGAAGTGGTGGAGATAAGAAGTTGTTGTTTTATGGGAATAAAGTGAAGGTGTTTGATTTGGAGGATTTGCTAAGGGCTTCTGCAGAGGTGTTGGGAAAAGGAACTTTTGGGACCACCTATAAGGCTGTTTTAGAGGAAGGGCCTGTGGTGGCTGTGAAGAGGCTGAGGGATGTGACGGTTTCGGAGAAGGAGTTTAAGGAGAAGATTGATGGGGTGGGAGTGATGGATCATGAGAATTTGGTGCCTCTCAGGGCTTACTATTATAGCAGGGACGAGAAGCTTCTTGTTCATGATTACATGCCAATGGGAAGCCTATCTGCAATTTTGCATGGTGAGGTGGCCGGCTACCGTGCCCCCGAAGTAACCGATCCACGGCGAGTTTCTCAGAAGGCTGATGTATACAGCTTTGGAGTGTTGCTCTTGGAACTTCTGACTGGAAAGGCTCCTACACATACCCTCTTGAATGAGGAAGGAGTGGACCTTCCGAGATGGGTCCAATCAGTGGTTAGAGAGGAATGGAGTTCAGAGGCGTTTGATATTGAACTCCTTAGGTATCAGAATTCTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCAGTGGATTGTGTAGTTCCATACCCTGGAAACCGCCCTTCAATGTCTCAAGTGAGACAACGCATGGAAGAGTTTCATAGGTCTAGTAGTACCATGAAAGAGGGTACTCAAGACCAAATTCATCAACCTGATTTGATCGATGATCTAGAAGATGTGTCATCTAGATGA 1836 0.5267 MQRSHKLFPTILFLFSFFSSTLSDLSSERAALLALRSAVRGRTLLWNTTFRSPCVWPGVQCDAANATVVELHLPAVALSGELPDGVFPELPNLHTLSLRVNSLSGTLPADLAACTALRNLFLQQNHFAGEVPAFLSGMTGLVRLNLASNNFSGPFPNRFGNLTRLRTLFLENNRLTGSIPGLEELGELAQFNVSYNMLNGSVPKKLQTFDKDSFLGNTLCGKPLGICPWDDGGGESGVNGSSNSSGVGGGGGSVIGGGKKKGKLSGGAIAGIVVGCVVALLLVLFALIILCRSGNKTRSVDNVSNVVGLKEEPQQHGEVGIEGGNVESGGGGGGDSVAAAAAAAAAAVAAVGGNGVGGGSGGDKKLLFYGNKVKVFDLEDLLRASAEVLGKGTFGTTYKAVLEEGPVVAVKRLRDVTVSEKEFKEKIDGVGVMDHENLVPLRAYYYSRDEKLLVHDYMPMGSLSAILHGEVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHTLLNEEGVDLPRWVQSVVREEWSSEAFDIELLRYQNSEEEMVQLLQLAVDCVVPYPGNRPSMSQVRQRMEEFHRSSSTMKEGTQDQIHQPDLIDDLEDVSSR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01390 611 MobiDBLite consensus disorder prediction 580 611 - -
Vian8g01390 611 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Vian8g01390 611 Gene3D Phosphorylase Kinase; domain 1 363 457 - -
Vian8g01390 611 FunFam pollen receptor-like kinase 1 355 457 - -
Vian8g01390 611 Gene3D Transferase(Phosphotransferase) domain 1 459 605 - -
Vian8g01390 611 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Vian8g01390 611 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vian8g01390 611 Gene3D Ribonuclease Inhibitor 27 137 IPR032675 -
Vian8g01390 611 ProSiteProfiles Protein kinase domain profile. 383 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01390 611 PANTHER OS05G0588300 PROTEIN 11 469 - -
Vian8g01390 611 SUPERFAMILY L domain-like 42 208 - -
Vian8g01390 611 MobiDBLite consensus disorder prediction 596 611 - -
Vian8g01390 611 SUPERFAMILY Protein kinase-like (PK-like) 387 581 IPR011009 -
Vian8g01390 611 Gene3D Ribonuclease Inhibitor 138 227 IPR032675 -
Vian8g01390 611 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Vian8g01390 611 Pfam Protein kinase domain 386 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g01390 611 Pfam Protein kinase domain 473 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01390 Vian-Chr8 33078032 33080546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01390 464 600 Receptor kinase-like Gene Family AT1G48480 53.623 7.67e-41 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vian8g01390 Pkinase 1.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01390 - - vum:124840126 707.597