Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01388 ATGTGTTGCAGAGACCGCTGCATACGTTGCATTTGCTGCACATTCATCACCCTCGTATTGCTGTTCATAGTTTTCTCAATCATCTTCTGGATAATCATCTCTCCATCAAACGTGAAGTTCCATGTAACTGATGCCTCCATCACACAATTCAACCTCACAAACAACAACACCTTGTATTACAACTTCAAGGTCAACGGCACAGTGAGAAACCCCAACAACAACATCGTAGTGTACTATAGGAGGATCAAAGCGATAGCTTGGTACAAAGACAATGATTTTGGTCGGGTAACCTTAACACCCTTTGACCAAGGCCACAAGAACACCACCGTCCTTCAGGTATTGTTTGAAGGGCAAAGTTTGCTTAAGCTCAGACGTCAACAACTTGGTGAGTATAAAGAAGAGACAAGTGTCGAGGTTTACAATGACATGGCTGTGGATTTTGATTTCAGAATCAGAGCCAAGTTTGGAAAGTTCAAGAGTAGTCGTTTCAATCCTCCCATCGTTCAGTGTCGGCGTTTGAGTGTTCCTTTGATTTCTAAGGGTAAATCATCACCTCCTTTTAGCGTCAGAAACTGTAGAGTTGGTCGTTCTTTCTTTGTTGATCGTGATGCTGAAGCTGAATGA 624 0.4263 MCCRDRCIRCICCTFITLVLLFIVFSIIFWIIISPSNVKFHVTDASITQFNLTNNNTLYYNFKVNGTVRNPNNNIVVYYRRIKAIAWYKDNDFGRVTLTPFDQGHKNTTVLQVLFEGQSLLKLRRQQLGEYKEETSVEVYNDMAVDFDFRIRAKFGKFKSSRFNPPIVQCRRLSVPLISKGKSSPPFSVRNCRVGRSFFVDRDAEAE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01388 207 PANTHER OS05G0367900 PROTEIN 7 176 IPR044839 GO:0098542
Vian8g01388 207 Pfam Late embryogenesis abundant protein 67 160 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01388 Vian-Chr8 33056715 33057338 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01388 32 151 SNARE and Associated Proteins AT1G32270 33.884 6.63e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01388 - - gmx:100783747 296.204