Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01367 ATGAGTTTGTGGGGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCATTTGCCAGGCAAAATCAGGTATAGATGGGTCATTGAATTTAAAAGTGGTGTCTCCCACTCTGTTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGGCCTTGTTCTTGAAGAAGCGAGGTTTGAGCAATGCGGTTGCTGCTAGAACCATCAACAAGTCAGATCTTTTTATTGATCACCTTGTCTCAAAGCTTCATTCTAAACACAGATCTTGGTATCTTGCAGGAAGAGAGCTTACAACTTTGGAGATCAGGGATGCTCTTATCCCTTATCTTGAATCTCTGTTTGAAGAGCATGGTGACATTCTAGTGGATGTCGTGGAAAACTATCCAAACCCACCTGTTAAGGACAAATCTGCAGTGCCAGTTCCTCCTTCTAGTCCAGTCTTAGACTCTAAGAAGCTTAAAGCTGTGTCACTAGTGAGTGAGACAGACTCAGATGGTGGCAATCTGCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTCGGAGTATCACACATCGATTCCCAGCTTTTGCCTACTATAGCTTGGAGGGTAAAGTTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGGGTTCCAAGAGAGCACATTCCCATTATCCTCAGTAAAAGGCCTCAGTTATGTGGTTTCAGTCTATCTGAAAATCTTAAACCCACCATGAAGTTCTTAGAGTCATTGGGTATTGACAAGAAGCAATGGCCAAAGCTGATCTATCGCTTCCCAGCCCTGCTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAGATTTCCTTCTTGAATTGGGCCTATCTGAAGAGAATATAGGTAAGATTTTAACTCGTTGCCCCAATATCGTTAGTTATAGTGTAGAGGACAATCTCCGACCCACAGCAAAGTACTTCCATTCTTTGGGGGCTGATGTTGGCATTCTTCTATTCAGATGCCCACAGAATTTTGGACTTAGCATTGAGGCCAACCTGAAACCTATAACAGCATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGTACCATGATTTCAAGATATGGAGCCTTGTATACTTTTAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGATACCCAAACTCTGAGCTGGTTAAATTTCCTCAGTATTTTGGATACAGTTTAGAGAAAAGGATTAAACCTAGATTTGCAATCATGAAGAAATCTGGGGTAAAGTTACTGCTGAACCAGGTTCTTTCTCTGTCAAGCAACAACTTTGACAAGGCCTTGAAAAAGAAAATGAAAAAAATGCAAGATGGTTAG 1356 0.4122 MSLWGTQLSFPAKVFICQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLALFLKKRGLSNAVAARTINKSDLFIDHLVSKLHSKHRSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPNPPVKDKSAVPVPPSSPVLDSKKLKAVSLVSETDSDGGNLRPHIVYLMELGMDIEQIRSITHRFPAFAYYSLEGKVKPVVEFFLELGVPREHIPIILSKRPQLCGFSLSENLKPTMKFLESLGIDKKQWPKLIYRFPALLTYSRQKVMESIDFLLELGLSEENIGKILTRCPNIVSYSVEDNLRPTAKYFHSLGADVGILLFRCPQNFGLSIEANLKPITAFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPNSELVKFPQYFGYSLEKRIKPRFAIMKKSGVKLLLNQVLSLSSNNFDKALKKKMKKMQDG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01367 451 SMART mt_12 184 215 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 SMART mt_12 324 355 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 SMART mt_12 392 423 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 SMART mt_12 360 391 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 SMART mt_12 220 251 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 SMART mt_12 256 286 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 FunFam Transcription termination factor MTERF5 chloroplastic 227 447 - -
Vian8g01367 451 Pfam mTERF 161 344 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 Pfam mTERF 34 281 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 Pfam mTERF 282 437 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 PANTHER CGI-12 PROTEIN-RELATED 123 442 IPR003690 GO:0003690|GO:0006355
Vian8g01367 451 Gene3D Transcription termination factor 3, mitochondrial 228 447 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian8g01367 mTERF 3.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01367 K15032 - gmx:100781900 734.947