Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01359 ATGGAAAACTCTTCATCATCTTCATCTTCAAACTCTATATATCGAGAGTGTCTCCGCAACCATGCAGCGAGTCTCGGTAGCTACGCTACTGATGGTTGCGGAGAATTCACTCTCGATGTCGACGTCTCCTCTTCCTCCCTCCAGTGTGCAGCTTGCGGTTGTCACCGTAACTTCCATCGCAAAGTGACGTGTCCTGGTGCGATGGAAGGTCTTCAGATTGGAGGGAGCGGGGATATAATGGAATATTCCGGAGGAGACGTCGGAAGAATAGAGATGGGAGAGAGGAGCAGCAGGAAGAGGTTCAGGACTAAGTTCAGTGCTGAGCAGAAGGAGAAGATGCTGGCGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAGAGAGGTGGATGATGAGATAGAGAGGTTTTGTAAAAGTGTTGGAGTTACAAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCTAACTCATCTAATTCTTCTGCTAATCTTTCTTCCCTCACTCAGTGA 519 0.4817 MENSSSSSSSNSIYRECLRNHAASLGSYATDGCGEFTLDVDVSSSSLQCAACGCHRNFHRKVTCPGAMEGLQIGGSGDIMEYSGGDVGRIEMGERSSRKRFRTKFSAEQKEKMLAFAEKLGWKLQRREVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANLSSLTQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01359 172 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 14 62 IPR006456 -
Vian8g01359 172 FunFam Zinc-finger homeodomain protein 2 88 160 - -
Vian8g01359 172 Gene3D - 84 162 - -
Vian8g01359 172 SUPERFAMILY Homeodomain-like 92 157 IPR009057 -
Vian8g01359 172 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 14 61 IPR006456 -
Vian8g01359 172 NCBIfam homeobox domain, ZF-HD class 98 156 IPR006455 -
Vian8g01359 172 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 157 - -
Vian8g01359 172 Pfam ZF-HD protein dimerisation region 13 63 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01359 Vian-Chr8 32727232 32727750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01359 14 156 ZF-HD Transcription Factor Family AT4G24660 44.311 1.63e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian8g01359 ZF-HD_dimer 3.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01359 - - vun:114182488 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04237 1 65241944 65242471 Vian8g01359 8 32727232 32727750 PCT