Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01356 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGCCACTGCCACTAATAAAAGGAAGAGAAGGCCCGCAGGAACTCCAGATCCAGATGCAGAGGTGGTGTCCCTCTCGCCCAAGACTTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCGTGGAAGCTATTGAAGAGGGAGACACCGGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAACCAACTTGTTTGCACCATGACCCTTGTCATGCCTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGAAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGCGGTACCCGGGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCCAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCAGAATCTCAGCCACTTCAACCCTCTGCGTGCCTTTCTAGAACAGCCTCAAGCCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCTTGGCCAACAAGGATCATAATACCAAAGCCAACAGAACCACCCACAATTTTCATGAATAACCCTACTGCTCATGCTATTACCACTGCTGAAACCTCATCCAAGAACAACAAAATCCACCCCAACTTGGATCTCCAACTCTCAACTCCCACCACCACCAACAACAACATCAAAAACAGTTCAAACGTTGCAAACCCCATTGATGTTGCAATATCAACATCATTATCACCTAAGAGGGATCGTCACGAGAACCACTCAACCCATTTGCAACTCTCAATTGGGTCATCGGATGTGAGTGAGAAAAATGAATCAAACAGGAACTCATCGGAGAAGAGCAGCAACAGCAACAATGGGAAGCAGTCCAACATGGCCTTATTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATAGCCATGGCTGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAACTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAGGCACAAGCCGAACTCGACAAGGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACCTGCCACGCTTGCAAACAACAATTCCAAGCTCGAAATGCAACCCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGAAGTTGAAAACGATAATGGAAAAGACCATGGCAAAGACAACTAA 1401 0.4789 MLANNLSPSSVPTSEPFPCTENATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRIIIPKPTEPPTIFMNNPTAHAITTAETSSKNNKIHPNLDLQLSTPTTTNNNIKNSSNVANPIDVAISTSLSPKRDRHENHSTHLQLSIGSSDVSEKNESNRNSSEKSSNSNNGKQSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCHACKQQFQARNATPDENSLVLSYVSSAITTEGGEVENDNGKDHGKDN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01356 466 Gene3D Classic Zinc Finger 35 97 - -
Vian8g01356 466 MobiDBLite consensus disorder prediction 194 220 - -
Vian8g01356 466 Gene3D Classic Zinc Finger 119 195 - -
Vian8g01356 466 MobiDBLite consensus disorder prediction 249 280 - -
Vian8g01356 466 MobiDBLite consensus disorder prediction 1 44 - -
Vian8g01356 466 MobiDBLite consensus disorder prediction 1 24 - -
Vian8g01356 466 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 410 IPR031140 -
Vian8g01356 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vian8g01356 466 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Vian8g01356 466 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vian8g01356 466 Coils Coil 354 409 - -
Vian8g01356 466 MobiDBLite consensus disorder prediction 306 340 - -
Vian8g01356 466 MobiDBLite consensus disorder prediction 193 223 - -
Vian8g01356 466 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Vian8g01356 466 MobiDBLite consensus disorder prediction 293 340 - -
Vian8g01356 466 SMART c2h2final6 134 161 IPR013087 -
Vian8g01356 466 SMART c2h2final6 98 128 IPR013087 -
Vian8g01356 466 SMART c2h2final6 57 79 IPR013087 -
Vian8g01356 466 FunFam protein indeterminate-domain 12-like 36 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01356 Vian-Chr8 32682308 32684963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01356 20 456 C2H2 Transcription Factor Family AT2G01940 56.347 9.83e-154 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian8g01356 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01356 K25871 - gmx:100800187 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04239 1 65253838 65255973 Vian8g01356 8 32682308 32684963 PCT