Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01341 ATGTGCAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAGCTTCGAGAATTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTTCGAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTCAATCAATTGGACCCGAGAATAAACAGAAGTCCTTTTACGGAGGAAGAAGAAGAGAGGCTTCTTGCTTCTCACAGGATTCATGGAAACAGATGGGCTGTGATAGCAAGACATTTCCCAGGAAGAACTGATAACGCAGTGAAAAACCATTGGCATGTGATGATGGCAAGGATTCGGAGAGAAAGATCCAAAGTTTATAACACCAAACAGCCACTTTTTCCTCCAAACCTTGACACCGATTTTGAGACTAATTCTATCCCTTCTTTTGTTGACAAGTATTATGAAAAGTTCACACACACTCCTTTTCACTTTCCCAACACCTTTCACTTTCAACATCCAACTTCTGCTTCCACACTGCCTCCAGAGAAGAGTCAATCAGTAGAGTTCTATGATTTTCTTCAAGTAAATACCGATTCCAATAAAAGTGAAGTGACAGACATAGCCAGAAGAGACGAAGAGGAAGTGAGTCAAGATGGTGTGGAACTGAAGAACATTGGTGTTCCATTCATTGATTTTTTGTCTTCTGGAGCATACTAA 675 0.4252 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYNTKQPLFPPNLDTDFETNSIPSFVDKYYEKFTHTPFHFPNTFHFQHPTSASTLPPEKSQSVEFYDFLQVNTDSNKSEVTDIARRDEEEVSQDGVELKNIGVPFIDFLSSGAY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01341 224 Pfam Myb-like DNA-binding domain 7 67 - -
Vian8g01341 224 Gene3D - 57 117 - -
Vian8g01341 224 Gene3D - 4 55 - -
Vian8g01341 224 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Vian8g01341 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Vian8g01341 224 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Vian8g01341 224 SMART sant 55 103 IPR001005 -
Vian8g01341 224 SMART sant 3 52 IPR001005 -
Vian8g01341 224 PANTHER MYB PROTEIN-RELATED 4 166 - -
Vian8g01341 224 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vian8g01341 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vian8g01341 224 CDD SANT 7 48 IPR001005 -
Vian8g01341 224 CDD SANT 58 101 IPR001005 -
Vian8g01341 224 FunFam MYB transcription factor 4 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01341 Vian-Chr8 32495854 32497692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01341 1 222 MYB Transcription Factor Family AT1G17950 59.426 1.08e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g01341 Myb_DNA-bind_6 8.2e-17 CL0123