Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01333 ATGGCTAATTTTGAGAATGACAAGCGCCCAATGTTGTCGGATACAGATGCACAACCATACGATGAACCTTCGGATTCTAAATTCCGAAGGATGGTAACCAGGACTCAAAGCGCTTCAATTTCTATTCCCATGAGCTCCTTGGAGTCATATGCGAAAGAAACTAGCCTTGTGGGACATACTGGTCCACTTCTGAGCAAGAGAAAAACACCCTATATGCATATGAGTGGTCCATTATATGCTACCACTGGAACTGGAAATCTTTTGCAGAAGCATGTCGTATCGGGAAACAAAGCAGATGACAGAAAGACAGATAATTTTTCTACTCTCCATGGCTCAAGTTCAAATTACCAAAATAGTGACTATGATAGAAAAAATGAACACTTACTAAGGTCTGGGCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAATGCTTCTCAGCAAAGAAATCCACAATCTTCTGCTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCCAAGAGTTTTGTGAGGAAACTTCCTTCTTTATTTTCTTCTTATGTTCCTGGAGTTATGAACCCTCACGCTAAAGTTGTACAAAAGTGGAGCAAATTTTTGGCCATTTTTTGCTTAATTGGTATTTTTGTGGACCCATTGTTTTTCTTTTCACTCTATGTGGAGAAGGTGAATAAATGCATTGTTATCAACTGGCCATTGGCAACAACACTTGCTTTAGTTAGATGCGTGAATGATTTTGTTTATTTCCTTAACATTCTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGTGAATCAAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTAAAGGGTTATTTCCTCATTGACTTATTTGTTGTATTTCCTCTTCCTCAGGTTTCTGCCACTGCTGATCGTCATGTTGTTGGCTCTTGCTGGTACCTCTTCGGTCTTCAGAGGGTTAATCAGTGTTTGCGGAATGCCTGTCATAACTCTAATATACCTGGATGCATGAAGTTCATTGATTGTGGACGTGGTCATCCAAATTTGACATCAAATCCGTGGATTAACAATACTGATGCTGTTGCTTGTATGGATTCCTCTGGTTTCACTTATGGGATTTATCAGTCTGCTGTACCACTTACTATAGAAACTAATGTAGTCAAGAAATACGTGTACTCTCTTTTTTGGGGATTCCAGCAAGTCAGTACTCTGGCTGGTAATCTAATTCCTAGCTATTTTGTGTGGGAAGTCCTTTTTACTATGGCCATCATAGGATCGGGACTCTTACTTTTTGCAATTCTCATTGGTAACATACAGAACTTTCTACAGGCTCTTGGACGGAGGAAACTGGAAATGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAGCCATCGGCGATTACCTGAAGATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTACAGCTGGGCCGCAACAAGGGGGGTGAATGAAGAAATGCTAATGGAGAATTTGCCAGAAGATCTGCAGAGAGACATAAGACGCCATCTCTTCAAATTTGTTAAGAAAATTCGGATTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGTGAGAGACTAAGACAAAAGACACACATTAAAGGAAGTAAAATTCTAAGTCATGGTTGTCTAGTAGAAAAGATGGTATTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACCAGAATTCCTCTATCTGAAGGGGATGCATGTGGTGAGGAACTTCTGACATGGTATCTTGAACATTCTTCAGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGGTCAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTGCACTCTCTGCTTCCGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGCCCATGCGTCCAAGGAGCCCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCTGCGACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGGCTAAGTCGTGTTAATTCCACACCATCAGATTGA 2100 0.4138 MANFENDKRPMLSDTDAQPYDEPSDSKFRRMVTRTQSASISIPMSSLESYAKETSLVGHTGPLLSKRKTPYMHMSGPLYATTGTGNLLQKHVVSGNKADDRKTDNFSTLHGSSSNYQNSDYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPQSSARWDPKFHNALYGDAKSFVRKLPSLFSSYVPGVMNPHAKVVQKWSKFLAIFCLIGIFVDPLFFFSLYVEKVNKCIVINWPLATTLALVRCVNDFVYFLNILLQFRLAYVSRESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQVSATADRHVVGSCWYLFGLQRVNQCLRNACHNSNIPGCMKFIDCGRGHPNLTSNPWINNTDAVACMDSSGFTYGIYQSAVPLTIETNVVKKYVYSLFWGFQQVSTLAGNLIPSYFVWEVLFTMAIIGSGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYSWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRIFALMDEPILDAICERLRQKTHIKGSKILSHGCLVEKMVFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFALSASDLEEVTILFTRFLRSPCVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRVNSTPSD 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01333 699 Pfam Ion transport protein 317 458 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian8g01333 699 ProSiteProfiles cAMP/cGMP binding motif profile. 531 599 IPR000595 -
Vian8g01333 699 SUPERFAMILY cAMP-binding domain-like 459 651 IPR018490 -
Vian8g01333 699 Gene3D Jelly Rolls 529 653 IPR014710 -
Vian8g01333 699 MobiDBLite consensus disorder prediction 1 27 - -
Vian8g01333 699 CDD CAP_ED 531 647 IPR000595 -
Vian8g01333 699 MobiDBLite consensus disorder prediction 97 121 - -
Vian8g01333 699 Gene3D Helix hairpin bin 458 523 - -
Vian8g01333 699 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 317 691 - -
Vian8g01333 699 SUPERFAMILY Voltage-gated potassium channels 199 459 - -
Vian8g01333 699 MobiDBLite consensus disorder prediction 9 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01333 Vian-Chr8 32400880 32410687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01333 317 609 Ion Channels AT3G17700 70.068 4.17e-133 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01333 K05391 - gmx:100794895 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01333 8 32400880 32410687 Vian8g01333 8 32400880 32410687 ECH