Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01331 ATGGCTCGTTTTGAAAAAGATGAGGTTCCTATGCTGTCTGAAACGCGTGCTCAACTGTCTGATGAATTAGTGGATTCTAATTTCCGGAGGCTAGTATCTAGAACACGAAGTGCTTCAATTTCGATTCCCATGGCTTCCTTGGAATCATATGAGAAAGAAACTAGTCTTGTGGGACATACCGGTCCCCTTCGTAGTGTGAGAAAAACCCCCTTTGTGCAGATGAGTGGTCCACTGTATGCTACCCATGGAACTTCAAATCTTTCAGGACAGAATATAGCTGCTACAGGAAACAAAGTAGTGGAAAGTAAGACAGAAAATTTTTCTACTTTCAATGGCACAAATGAAAATCGTTGGGATAATGACTATGACAGAAAGAATGAACACTTAATGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTCAAGGCTGCTCAGCCAAGAACTCGAAAAACTTCAGCTATATTTGATCCCAAGTTCCACCATGTTTTTTATGGAGATGCCAAGGGTTTTGGCCGAAAATTTTTTTCCTTCTGCTATTCATATGTTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTACAACAATGGAACAAGATCTTGGCCATTTTTTGCTTGGTGGCAATTTTTGTTGATCCATTATTTTTCTTCTTATTATATGTGAAGGAGGATGATAAATGTATTGCTATCAATTGGACAATGACAACAACACTTGTTTTTTTTAGAAGCATTAATGATTTGATATATTTCTTTAACATTCTTCTCCAGTTTAGGCTGGCTTATGTTTCTCCTGAGTCAATGGTAGTAGGTGCTGGAGATTTAGTTGACCAACCCAAGAAAATTGCTCTCAATTATCTGAAGAGTTATCTTTTTATCGACCTATTTGTTGTATTTCCTCTTCCTCAGGTAATGATATTATCTGTCCTACCAAACTACCTGGGATCATCTGGAGCAAATTATGCTAAAAATCTTCTGCGTGCAGCAATCCTTGTGCAGTATTTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCTTTCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGCTTGCGAAATGCCTGCCGTGATTCTAATATTCGTGGATGCTCAACATTTATTGATTGTGGACGTTCATCTGGCCGTAAGTCAGATATATGGAGCGAAAATGTGAATGCCTCTGCATGTTTGAATGCCAGTTCCGGTGCTTTTCAATATGGAGTCTATGTAAATGCTGTAGCACTTACTACAGAAACTAGGGTGGTCAACAAATATGTATTTGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTTTGGCTGGTAATCAAACCCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACGATGGCCATCATAGGTTTGGGACTCTTACTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAACAATGGATGAGCCACCGTCGCTTGCCAGAAGATCTAAGAAGGAGAGTACGACAAGCTGAACGGTATAATTGGGCAGCAACAAGGGGTGTAAATGAAGAGACGCTTCTGGAGAATTTACCCGAAGATCTCCAGACAGACATAAGACGTCATCTCTTCGAGTTTGTTAAGAAAGTTCGCATCTTTGCCCTGATGGATGAGCCTATCTTAGATGCAATTTGCGAGAGACTAAAGCAAAAGACATACATCAAAGGAAGTAAAATTTTTACTCAGGGTGGTCTGGTAGAGAAAATGGTCTTTGTTGTTCGAGGGAAATTGGAGAGCTTTGGAGATGATGGAACTAGTGTTCCCTTATTTGAAGGGGATGCTTGTGGTGAAGAACTTCTCACATGGTATCTTGAGCATTCTTCTGTAACCACAGATGGAAAAAAAGTAAGAGTTCAAGGACAGAGGTCGCTGAGTAAAAGGACTGTAAGATGCTTAACAAATGTAGAGGCATTTTCACTTCGTGCCGGAGACCTTGAGGAACTCACAATTCTTTTCACTAGATTCTACCCTCATGTTCAAAGAACTCTAAGGTATGTATCACCTTATTGGAGATCCCTTGCAGCAAGTCGTATTCAGGTTGCATGGAGATACAGAAAGAAGCGTCTAAGTCGTGCCTATACCTCTCAATCAGATCAAACATTCTGA 2298 0.4047 MARFEKDEVPMLSETRAQLSDELVDSNFRRLVSRTRSASISIPMASLESYEKETSLVGHTGPLRSVRKTPFVQMSGPLYATHGTSNLSGQNIAATGNKVVESKTENFSTFNGTNENRWDNDYDRKNEHLMRSGQLGMCNDPYCTTCPTYFKAAQPRTRKTSAIFDPKFHHVFYGDAKGFGRKFFSFCYSYVPGVMNPHAKVVQQWNKILAIFCLVAIFVDPLFFFLLYVKEDDKCIAINWTMTTTLVFFRSINDLIYFFNILLQFRLAYVSPESMVVGAGDLVDQPKKIALNYLKSYLFIDLFVVFPLPQVMILSVLPNYLGSSGANYAKNLLRAAILVQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSFWYLFGLQRVNQCLRNACRDSNIRGCSTFIDCGRSSGRKSDIWSENVNASACLNASSGAFQYGVYVNAVALTTETRVVNKYVFALFWGFQQISTLAGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEETLLENLPEDLQTDIRRHLFEFVKKVRIFALMDEPILDAICERLKQKTYIKGSKIFTQGGLVEKMVFVVRGKLESFGDDGTSVPLFEGDACGEELLTWYLEHSSVTTDGKKVRVQGQRSLSKRTVRCLTNVEAFSLRAGDLEELTILFTRFYPHVQRTLRYVSPYWRSLAASRIQVAWRYRKKRLSRAYTSQSDQTF 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01331 765 Gene3D - 199 521 - -
Vian8g01331 765 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 757 - -
Vian8g01331 765 ProSiteProfiles cAMP/cGMP binding motif profile. 596 664 IPR000595 -
Vian8g01331 765 SUPERFAMILY Voltage-gated potassium channels 200 524 - -
Vian8g01331 765 Gene3D Helix hairpin bin 523 588 - -
Vian8g01331 765 SMART cnmp_10 596 731 IPR000595 -
Vian8g01331 765 CDD CAP_ED 596 712 IPR000595 -
Vian8g01331 765 Gene3D Jelly Rolls 594 718 IPR014710 -
Vian8g01331 765 SUPERFAMILY cAMP-binding domain-like 524 725 IPR018490 -
Vian8g01331 765 Pfam Ion transport protein 207 524 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01331 Vian-Chr8 32370802 32380034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01331 5 673 Ion Channels AT3G17700 61.095 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01331 K05391 - ccaj:109789004 1327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01331 8 32370802 32380034 Vian8g01331 8 32370802 32380034 ECH