Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01330 ATGGCTAATTTTGAAAAAACTGGGGAGCCTAGTCCATCCGAAACACATGCAAAACATAACGAACATTCTAGGTCTGGGAAGGTTGTATCAAGGACACGAAGTGCATCAGTTTCTATTCCTGTAATCTCCATGGAGTCATATGAGAGAGAAATTAGTCTTGTGGGTCATACTGGTCGACTTCCTAGTGTAAGAAAACCATCCTTAATGCATATGAGTGGGCCACTATATGTTACCAATGGAACTGAAAATCCTTTGAAGCACACTATAGTTGTGGAAGGAAACAAAGTAGTGGAGAGCAAGACAGAAAAATTTTGTAATCTTAGTGAGAAAGATGAAAATCATTGCAATAACAACTATGATACAAAGAATGAACACTTGGTGAGGTCTAGGCTACTCGGAACATGTAACGATCCTTATTGTACTACTTGCCCAACTTACTTCAAGACCTCTATGCAAAGACTTCCAAATGATTCCACTGTGTTTGATCCCCAGTTTCACTTCCACAGTGCTCTTTATGGGGATGCCAAGGGTTTTGGTGGAAAAGTTCTCTCTTTCTGTTCTTCATGTGTTCCTGGAGTTATGAATCCTCACTCAAAAGTTGTACAACAATGGAACAAGCTTTTGGCCATTTTTTGCATGGGAGCAATTTTTGTGGATCCGTTATTTTTGTTTTTAATATATGTACAGAAGGATGATAAATGTATAGCTATCGACTGGGATACGAGAAAAATACTTGTTTTTCTTAGAACAGTGAATGATACTGTGTATTTCTTGAACATTCTTCTCCAGTTTAGGCTGGCCTATGTTTCTCCAGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATCATCCCAAGAAAATTGCACTTCATTACCTTAAGGGTTATTTTCTTTTTGACTTGTTTGTTGTATTTCCTCTTCCTCAGATAATGATGTTTTTTGTCCTACCAACCCGCTTGGGGGCATCAGGAGCAAACTATGCAAAGAATCTTCTTCGTGCAGCGATCCTTGTGCAGTATATTCCCAGATTATTCAGGATCCTGCCTCTGCTAATTGGACAATCTGAAACAGGATTTATATTTGAATCAGCTTGGGCAAACTTCATCATAAATCTTCTCATTTTCATGCTTGCTAGCCATATTGTTGGCTCTTGCTGGTATCTCTTCGGTCTACAGAGGGTTAATCAATGCTTGCGAGATGTCTGCGGAAAGTCTCGTATTGATAGATGCACGACAATCATTGATTGTGGAAGACGAGGTTATATCAGAAACAACTATTCCGACCAAGCATCAGCTCTATGGAACAATAACACAGACGCCATTGCTTGTTTGAATTCCTCACCCGGCGGTTTCCAATATGGGATCTATGTCAATGTTGTACCTCTTACCACGGAAACTAGTTTGATTAACAAATATATTTATTCTCTTTTTTGGGGGTTCCAGCAAATTAGTACTCTCGCTGGTAGTTTAACCCCAAGCAGGTTTTGGGGAGAAGTCCTTTTTACAATGGCCATTATAGGATTGGGACTCTTGCTTTTTGCAGTTCTGATTGGAAACATACATAACTTTCTTCAAGGTCTTGGAAGAAGAAGGCTAGAAATGCAACTCAGAGGCCGCGATGTTGAGCAATGGATGAGGCATCGTCGTTTACCAGAAGATCTAAGAAAGAAAGTACGAAGCGCTGAACGGTATAATTGGGCTGCAACAAAAGGGGTGAATGAAGAAATGATTCTTGAGAATTTGCCCGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAGTCCGAATTTTCACTCTGATGGATGAACCTATCTTGGATGCCGTCTGTGAGAGACTGAGACAGAAGACATACATAAAAGGAAGTTTAATTTTGACCCAAGGTTGTCTAATTGAGAAGATGATCTTTATTGTGCGCGGAAAATTGGAGAGCATTGGAGAAGACGGAGTTGGAGTTCCCTTGTCTGAAGGAGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACATTCTTCTTCTGTAAGCACAGGTATAGCTATACTTGATGGTAAAAAAGTAAGGCTTCCAGGGCAGAGGTGGCTTAGCAACAGGACAGTAAAGTGCCTAACAAATGTGGAGGCATTTTCAATCCGAGCTGAAGATCTTGAAGAAGTCACAAGCCGGTTCATGAGATTCTTGCGGAATCTTCGGGTTCAAGGATCTCTAAGGTATGAATCACCTTACTGGCGATCATTGGCAGCAACTCGAATTCAGGTGGCATGGAGATACTGGAAGAAACGTAGAAGTAATTCTATGACCTCACAATTAGATCAACCAATGAATTTGTAG 2346 0.4049 MANFEKTGEPSPSETHAKHNEHSRSGKVVSRTRSASVSIPVISMESYEREISLVGHTGRLPSVRKPSLMHMSGPLYVTNGTENPLKHTIVVEGNKVVESKTEKFCNLSEKDENHCNNNYDTKNEHLVRSRLLGTCNDPYCTTCPTYFKTSMQRLPNDSTVFDPQFHFHSALYGDAKGFGGKVLSFCSSCVPGVMNPHSKVVQQWNKLLAIFCMGAIFVDPLFLFLIYVQKDDKCIAIDWDTRKILVFLRTVNDTVYFLNILLQFRLAYVSPESRVVGAGDLVDHPKKIALHYLKGYFLFDLFVVFPLPQIMMFFVLPTRLGASGANYAKNLLRAAILVQYIPRLFRILPLLIGQSETGFIFESAWANFIINLLIFMLASHIVGSCWYLFGLQRVNQCLRDVCGKSRIDRCTTIIDCGRRGYIRNNYSDQASALWNNNTDAIACLNSSPGGFQYGIYVNVVPLTTETSLINKYIYSLFWGFQQISTLAGSLTPSRFWGEVLFTMAIIGLGLLLFAVLIGNIHNFLQGLGRRRLEMQLRGRDVEQWMRHRRLPEDLRKKVRSAERYNWAATKGVNEEMILENLPEDLQRDIRRHLFKFVKKVRIFTLMDEPILDAVCERLRQKTYIKGSLILTQGCLIEKMIFIVRGKLESIGEDGVGVPLSEGDACGEELLTWYLEHSSSVSTGIAILDGKKVRLPGQRWLSNRTVKCLTNVEAFSIRAEDLEEVTSRFMRFLRNLRVQGSLRYESPYWRSLAATRIQVAWRYWKKRRSNSMTSQLDQPMNL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01330 781 Gene3D Helix hairpin bin 529 594 - -
Vian8g01330 781 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 135 772 - -
Vian8g01330 781 MobiDBLite consensus disorder prediction 11 28 - -
Vian8g01330 781 ProSiteProfiles cAMP/cGMP binding motif profile. 602 680 IPR000595 -
Vian8g01330 781 SUPERFAMILY cAMP-binding domain-like 530 735 IPR018490 -
Vian8g01330 781 Gene3D - 202 526 - -
Vian8g01330 781 SUPERFAMILY Voltage-gated potassium channels 196 530 - -
Vian8g01330 781 Pfam Ion transport protein 206 527 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian8g01330 781 CDD CAP_ED 602 735 IPR000595 -
Vian8g01330 781 Gene3D Jelly Rolls 600 730 IPR014710 -
Vian8g01330 781 SMART cnmp_10 602 740 IPR000595 -
Vian8g01330 781 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01330 Vian-Chr8 32358637 32365677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01330 20 688 Ion Channels AT3G17700 57.738 0.0 756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01330 8 32358637 32365677 Vian8g01330 8 32358637 32365677 ECH