Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01326 ATGGAAATGCAGGATCAAATAGAAAACACAAGATCAACCATATCAGGCTCAGCTAGTAACTGCCATTCAAATGCTGGAAAACAATCTGAAAATGTTGCTCATATACCTTCTGTCCGAAACGGCCATGCTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTACGGTCGAGGGTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTTAGGGAATCTGAGGGAAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCCCTCCACCCATATCCTCGAAAATCAGTTGATGCTTTCAGAGGACATGCCATACCAAATGAAACTGAAACATCTCAATCCACAAACCTGTTGGTTGCAGAGAAAGACACCCCATCTCCGACCTCTGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCGCCAAACTCTTGCACAACTGATATTCACTCCGTCAGCTTGTCACCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAAAAAGGATCTCCAGCTTCAGTTCCTTTATCCATTGTTTCTGACCCAAACATGTGCATGAAGCCCGAATTTAGTTCCAAGGAAACTGAATATGGTATAGATGATTCGGCCAATATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACGGTATCTATGGTAGACAATCAGAAGCCGCAGAACATAGATGACAATGGTAAGGCAATAATAACTGTTAAGTCTGATGTAGTGGATGATGCTGGGAATGAGAAGCTTGGTCAATCAACCGAGCAAGTAGATACACAATTATCACTAGGCTTGGTTGGTGGCAACTGTTCCATAACACCTGATTCTGATGGAGCTGATCGCAGTGAAGAGCCACCGAAGGAGAACGTGTGCCTCAGTGAATGTGTACCTGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTCCCAGCTTTCTGTGTAAGCCCATGCAATCAGATCCTAAATCACATGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGTACTGGTTCCAACACAGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTGTGAAAAATATGAAGGGGAAGGAGCTGCACCCCAGAAGCCTGCAAGAGGGTTTGTTCCATATAAAAGATGTTTGGCCGAAAGAGATGGAACTTCTTTAATTGCGGCTTTGGAAGAGAGGGACGGGCAACGAGCTCGTGTGTGCTCATAG 1431 0.4396 MEMQDQIENTRSTISGSASNCHSNAGKQSENVAHIPSVRNGHAPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSVDAFRGHAIPNETETSQSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSIVSDPNMCMKPEFSSKETEYGIDDSANMPQTTSIKLFGRTVSMVDNQKPQNIDDNGKAIITVKSDVVDDAGNEKLGQSTEQVDTQLSLGLVGGNCSITPDSDGADRSEEPPKENVCLSECVPDASFPQWSLYQGLPAFCVSPCNQILNHMPLRPSLKVRAREEESCCTGSNTESVCDMENQGKNSDAVDSKCEKYEGEGAAPQKPARGFVPYKRCLAERDGTSLIAALEERDGQRARVCS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01326 476 FunFam protein REVEILLE 6 isoform X1 58 106 - -
Vian8g01326 476 MobiDBLite consensus disorder prediction 1 52 - -
Vian8g01326 476 MobiDBLite consensus disorder prediction 209 242 - -
Vian8g01326 476 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vian8g01326 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vian8g01326 476 Gene3D - 58 105 - -
Vian8g01326 476 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Vian8g01326 476 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Vian8g01326 476 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
Vian8g01326 476 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
Vian8g01326 476 CDD SANT 58 101 IPR001005 -
Vian8g01326 476 PANTHER SWI/SNF COMPLEX-RELATED 24 288 - -
Vian8g01326 476 MobiDBLite consensus disorder prediction 111 134 - -
Vian8g01326 476 SMART sant 55 103 IPR001005 -
Vian8g01326 476 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01326 Vian-Chr8 32271302 32274814 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian8g01326 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01326 - - vum:124836796 919.457