Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01325 ATGGCAAACATGGTCTTTGTTGGTGTTAAGGTTGCCGCTGTTTCTCTACCACCATTACCCATTACAAACAAAGCTCTAACTTTTAGTTTCACCCAGAAGAGACACTTCCTTCTCCTGAATTGCTCCCGAACCAATAACAGAACATTGTCTTTCTCTTCTTCCTTCTCAATCTCATCATCTCCCCTCACAAACAAGGGTGGTTGTTCTGTGTTGGCTTGTCTCCCTCCTGCTTCGTCTGAATCCTCAACCTCATCATCTTCCACTGCTAAACCCTCTTCCACTTTCCCTTCAACTAAGCTTTATGTCAGTGGGCACCTTGATGTGCCTTATATACTAGCTATGATTGCTCTTGATTCAATGGTCATTTGCCATATGTTGTTGCTAAAGTCTACAGATTGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAATTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTACGCAACTGAAGAAGAATCTCAGAAGGCTATTGAGGGAATGCATGGAAAGTTTTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGCTACCGCAGCGGAACAGGCAAGGCACAAGATTGTTGTAA 663 0.4268 MANMVFVGVKVAAVSLPPLPITNKALTFSFTQKRHFLLLNCSRTNNRTLSFSSSFSISSSPLTNKGGCSVLACLPPASSESSTSSSSTAKPSSTFPSTKLYVSGHLDVPYILAMIALDSMVICHMLLLKSTDWLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPQRNRQGTRLL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01325 220 PANTHER NUCLEOLAR PROTEIN 8 84 213 - -
Vian8g01325 220 Gene3D - 74 216 IPR012677 -
Vian8g01325 220 SMART rrm1_1 125 201 IPR000504 GO:0003723
Vian8g01325 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 198 IPR000504 GO:0003723
Vian8g01325 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 205 IPR000504 GO:0003723
Vian8g01325 220 SUPERFAMILY RNA-binding domain, RBD 134 217 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01325 Vian-Chr8 32268108 32270330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01325 134 208 Eukaryotic Initiation Factors Gene Family AT4G34110 28.000 7.68e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01325 - K13195 gmx:100305561 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01325 8 32268108 32270330 Vian8g01325 8 32268108 32270330 ECH