Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01323 ATGTCACCGGTTGGATTACCACCAGGCTTTAGGTTCCATCCAACCGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCGATGGCCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCCAGTAGAGATCCAGAGTGGTACTTTTTTGGACCCCGGGATAGGAAATACCCGAATGGGTTTAGAACAAATAGAGCAACTCGTGCAGGGTACTGGAAGTCCACTGGAAAAGATAGGAAAGTTTCCTGCCAAAGCAGACCCATTGGCATGAAGAAGACTTTGGTGTACTATAGAGGCAGAGCTCCTCAAGGAATCAGAACTGATTGGGTAATGCATGAGTATCGCCTTGATGACAAAGAGTGTGAAGACACCACTGGATTACAGGATACTTATGCATTGTGCCGGGTGTTCAAGAAAAATGGAATCTGTTCTGAGATTGAAGAGCAAGGACAATGTAGTATATCACTCATTGAGAGCTGCCAAACCATGATTAATGAGTGTGATACCATGTCTCCTGACATACCAGGCGCATCATCATCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGAAGAACTCTCACATGTTACATTTACAAACTAA 714 0.4244 MSPVGLPPGFRFHPTDEELVNYYLKRKIDGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSEIEEQGQCSISLIESCQTMINECDTMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNAAMVGGEELSHVTFTN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01323 237 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Vian8g01323 237 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 176 - -
Vian8g01323 237 FunFam Nac domain-containing protein 86 15 159 - -
Vian8g01323 237 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vian8g01323 237 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vian8g01323 237 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01323 Vian-Chr8 32250656 32254237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01323 1 226 NAC Transcription Factor Family AT3G17730 75.519 2.32e-131 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian8g01323 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01323 - - gmx:100784495 491.115