Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g01322 ATGGTGGATGTCATGGTAATGAAGGAGATCGAAGACACTACACTGCTTCTCGGTGTCGATTCCTCTATTCTTGATCTCGACTCCATTTGTCTTCCTCCCAGCGAAACTTGCAGAATTGTTAGTGATGATGAGGAAGTTTACGAAGAGGATAATCTCGAGTTCGAGTCCGGATTTGGAAACATCATTATATTCGACAACTTCCCTATCATTCGTTTAACATTATCTTCAATTGGTGAATATAAGAAAGCTGAGGATGCACATCTAAAATCACTTCAAATTGATAGAAATTTTCTTGAAGCATGGGCACACCTGACTCAGTTCTATCAAGATATATCAAAGCCAACAAAAGCTCAAGAATGTCTAAGTCAGATGTTGCAAATTGATGGAAGTGGCACACCTATAGGGGGTTCTTTTAAGGCATTCTGCAATGTGATCGACAGTGATTCCGTTCGAGTGGAGCTCCTCCATGATCCTATCCTGAGTCAATTTTCAAACGCGAAAATGAGCATGGAGGATTTCAATTGCAGGATTCATGCACGAGTATCAGAGAAAAATGGTACTGTTACTTCGAAAACCACCGCCACGCTTCCGCCCATTTTAGCCCTTCTCAATCTACCACTGATTGAAAAAATTGATAAGCAAGGGAATGGTTCTGCTAGAGTGCAAGGTGATAGTATTGAAAGAAAGAGGGAGAAAATGGAATATGCTGTTGCTCCACATCCGGGGATTGGTAGTGTTCCCAAAGCCATGGAAGGTGAACAGGTTGCAGCTGGGAAGGCGATCAATGATTTGTCAATAGGTTTGAGCGTTGATGGCCCTAATGTTGAGTGTTTATATTTGCGAGCTTCATGCTACCATGCTCTTGAACAATACAAAGAGGTGGTCAACGATTATGATGCTGCTCTGGATTTGGAATTGGACTCAATGGATAAGTTTATGCTTCAGTGCCTTGCCTTTTACCAGGTTGGGGCAATTGCTTTTGTTGCTTTAACAAGACTGCTAGTATTGGAGCAGTTGCAGGTTGCTGCTTTGACAACTATTGACATGGTGATAGCTTCTTGTCCTATAACATTTCACACTATGGGAAACTGA 1092 0.4185 MVDVMVMKEIEDTTLLLGVDSSILDLDSICLPPSETCRIVSDDEEVYEEDNLEFESGFGNIIIFDNFPIIRLTLSSIGEYKKAEDAHLKSLQIDRNFLEAWAHLTQFYQDISKPTKAQECLSQMLQIDGSGTPIGGSFKAFCNVIDSDSVRVELLHDPILSQFSNAKMSMEDFNCRIHARVSEKNGTVTSKTTATLPPILALLNLPLIEKIDKQGNGSARVQGDSIERKREKMEYAVAPHPGIGSVPKAMEGEQVAAGKAINDLSIGLSVDGPNVECLYLRASCYHALEQYKEVVNDYDAALDLELDSMDKFMLQCLAFYQVGAIAFVALTRLLVLEQLQVAALTTIDMVIASCPITFHTMGN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g01322 363 Gene3D Tetratricopeptide repeat domain 226 343 IPR011990 GO:0005515
Vian8g01322 363 SUPERFAMILY TPR-like 259 323 IPR011990 GO:0005515
Vian8g01322 363 PANTHER SUPPRESSOR OF RPS4-RLD 1 259 321 IPR044650 GO:0045892
Vian8g01322 363 Gene3D Tetratricopeptide repeat domain 72 133 IPR011990 GO:0005515
Vian8g01322 363 SUPERFAMILY TPR-like 74 128 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g01322 Vian-Chr8 32222296 32227185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g01322 5 70 Eukaryotic Initiation Factors Gene Family AT5G27640 46.970 8.52e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g01322 - - vum:124819865 119.398